Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP05_T7_H06
(778 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431... 140 1e-33
07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609... 137 8e-33
12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902 29 3.1
06_03_0543 + 21967787-21970261 29 5.4
12_02_1050 + 25689933-25690954,25691021-25691215,25691357-25691423 28 7.2
02_02_0210 + 7873962-7874753 28 9.5
02_02_0209 + 7866348-7867139 28 9.5
01_07_0027 - 40578075-40578437,40578647-40578767,40578852-405789... 28 9.5
01_06_0533 + 30052538-30054004 28 9.5
>03_01_0582 -
4318837-4318967,4319219-4319399,4319504-4319701,
4319791-4320053,4320453-4320597
Length = 305
Score = 140 bits (339), Expect = 1e-33
Identities = 61/103 (59%), Positives = 80/103 (77%)
Frame = -2
Query: 651 EPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWL 472
EPRLLI+ DP DHQPI E++ NIP IA C+TDSP+R+VDI IP N K +SIG ++WL
Sbjct: 122 EPRLLILTDPRTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGRNSIGCLFWL 181
Query: 471 LAREVLRLRGVLPRDQRWDVVVDLFFYRDPEESEKDEQQAKEQ 343
LAR VL++RG + +WDV+VDLFFYRDPEE+++ E++A Q
Sbjct: 182 LARMVLQMRGTILPGHKWDVMVDLFFYRDPEEAKEQEEEAPAQ 224
Score = 56.8 bits (131), Expect = 2e-08
Identities = 25/38 (65%), Positives = 30/38 (78%)
Frame = -1
Query: 769 SRPFGQRAVLKFAAHTRXTXIAGRFTPGAFTNQIQAAF 656
+RP+GQRAVLKFA +T IAGR TPG FTNQ+Q +F
Sbjct: 83 ARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSF 120
>07_03_1272 -
25360180-25360286,25360454-25360658,25360748-25360945,
25361034-25361296,25361865-25362009
Length = 305
Score = 137 bits (332), Expect = 8e-33
Identities = 59/99 (59%), Positives = 77/99 (77%)
Frame = -2
Query: 651 EPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWL 472
EPRLLI+ DP DHQPI E++ NIP IA C+TDSP+R+VDI IP N K SIG ++WL
Sbjct: 122 EPRLLILTDPRTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGKQSIGCLFWL 181
Query: 471 LAREVLRLRGVLPRDQRWDVVVDLFFYRDPEESEKDEQQ 355
LAR VL++RG + +WDV+VDLFFYRDPEE+++ E++
Sbjct: 182 LARMVLQMRGTILPGHKWDVMVDLFFYRDPEEAKEQEEE 220
Score = 56.8 bits (131), Expect = 2e-08
Identities = 25/38 (65%), Positives = 30/38 (78%)
Frame = -1
Query: 769 SRPFGQRAVLKFAAHTRXTXIAGRFTPGAFTNQIQAAF 656
+RP+GQRAVLKFA +T IAGR TPG FTNQ+Q +F
Sbjct: 83 ARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSF 120
>12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902
Length = 781
Score = 29.5 bits (63), Expect = 3.1
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = -1
Query: 235 TRCSSCFWSTPCSRRMVCPGAR*VEHN 155
T C C P + VCPG+R V+ N
Sbjct: 275 TECKKCLAGAPAGIKQVCPGSRTVKAN 301
Score = 27.9 bits (59), Expect = 9.5
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = -1
Query: 235 TRCSSCFWSTPCSRRMVCPGAR 170
TRC C P R CPG+R
Sbjct: 81 TRCKECLARAPAGVRQECPGSR 102
>06_03_0543 + 21967787-21970261
Length = 824
Score = 28.7 bits (61), Expect = 5.4
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = -2
Query: 486 LMWWLLAREVLRLRGVLPRDQRWDVVVDLF 397
L W++L RE +LRGV P + ++++ + F
Sbjct: 472 LGWFILRREAKQLRGVWPAEAGYEMIANHF 501
>12_02_1050 + 25689933-25690954,25691021-25691215,25691357-25691423
Length = 427
Score = 28.3 bits (60), Expect = 7.2
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = -1
Query: 235 TRCSSCFWSTPCSRRMVCPGAR*VEHN 155
T+C C P VCPG+R V N
Sbjct: 93 TQCKECLAGAPAGITQVCPGSRTVNAN 119
>02_02_0210 + 7873962-7874753
Length = 263
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Frame = -1
Query: 256 RYRPACCTRCSSCFWSTP--CSRRMVCPGA 173
R++PA R W+TP C RR C GA
Sbjct: 31 RWQPAAAARRKGTAWNTPLRCWRRWWCSGA 60
>02_02_0209 + 7866348-7867139
Length = 263
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Frame = -1
Query: 256 RYRPACCTRCSSCFWSTP--CSRRMVCPGA 173
R++PA R W+TP C RR C GA
Sbjct: 31 RWQPAAAARRKGTAWNTPLRCWRRWWCSGA 60
>01_07_0027 -
40578075-40578437,40578647-40578767,40578852-40578952,
40579176-40579451,40579485-40579805,40581609-40581623,
40581969-40582295,40583287-40583538
Length = 591
Score = 27.9 bits (59), Expect = 9.5
Identities = 16/39 (41%), Positives = 19/39 (48%)
Frame = +1
Query: 385 VTVEEQINHNIPALVTGKHTTKPQHFTCQQPPHQTNRVG 501
V + Q NIP LVT TTK + F PPH +G
Sbjct: 462 VNNKPQAKPNIPRLVTSTSTTKLERF---PPPHLDASIG 497
>01_06_0533 + 30052538-30054004
Length = 488
Score = 27.9 bits (59), Expect = 9.5
Identities = 12/50 (24%), Positives = 25/50 (50%)
Frame = -2
Query: 708 LRDVSHQVLLLTRSKLHSREPRLLIVLDPAQDHQPITEASYVNIPVIALC 559
L D+ L + H+ L+V+D A+D +P+ + ++ + A+C
Sbjct: 229 LEDMGDHRALTVKHGSHASHGSSLVVVDLAEDEEPVGDGAWRRLRSSAMC 278
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,595,274
Number of Sequences: 37544
Number of extensions: 401793
Number of successful extensions: 1085
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1039
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1085
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2080154268
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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