Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP05_T7_G20
         (770 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    24   1.8  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    23   2.4  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    21   9.6  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   9.6  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   9.6  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    21   9.6  

>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +2

Query: 695 VPGPFTLXLDGTPXXWIX*C 754
           VPGPF+L + GT   WI  C
Sbjct: 53  VPGPFSLPIFGT--RWIFSC 70


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 11/40 (27%), Positives = 17/40 (42%)
 Frame = +1

Query: 592 TRSDTFVSFALGDTNAVNHFILGKHRIDRDRFSRCSWPIH 711
           T+S   + F     N   +  +G   ++R  F  C WP H
Sbjct: 547 TKSSVTIPFERTFRNLDENRPIGGDSLERFDFCGCGWPQH 586


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -2

Query: 412 RMAKLLKTMHLLSMICLRNPLHRWE 338
           R+AKLL  + LL +  L   + +WE
Sbjct: 209 RLAKLLSLVRLLRLSRLVRYVSQWE 233


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -2

Query: 412 RMAKLLKTMHLLSMICLRNPLHRWE 338
           R+AKLL  + LL +  L   + +WE
Sbjct: 209 RLAKLLSLVRLLRLSRLVRYVSQWE 233


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -2

Query: 412 RMAKLLKTMHLLSMICLRNPLHRWE 338
           R+AKLL  + LL +  L   + +WE
Sbjct: 209 RLAKLLSLVRLLRLSRLVRYVSQWE 233


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = +1

Query: 223 LFVCTRRDFLRVMIRFL 273
           ++ C  RDF R  +R L
Sbjct: 389 IYACWSRDFRRAFVRIL 405


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 212,745
Number of Sequences: 438
Number of extensions: 4347
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24154023
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)