Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP05_T7_G05
         (794 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0...   136   5e-33
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...   132   6e-32
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S...    42   8e-05
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc...    28   1.3  
SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|ch...    28   1.8  
SPAPB21F2.03 |||ribosome biogenesis protein |Schizosaccharomyces...    27   4.1  
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces...    26   5.4  

>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 292

 Score =  136 bits (328), Expect = 5e-33
 Identities = 70/117 (59%), Positives = 79/117 (67%)
 Frame = -2

Query: 709 AAHTGATXIADVSHQVLLLTRSKLHCREPRLLIVLDPAQDHQPITEASYVNIPVIALCNT 530
           AAHTGAT IA                REPRL++V DP  D Q I EAS+VNIPVIALC+T
Sbjct: 93  AAHTGATAIAGRFTPGNFTNYITRTYREPRLIVVTDPRADAQAIKEASFVNIPVIALCDT 152

Query: 529 DSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYRXP 359
           DS L  VDIAIP N K   SIGL+W+LLAREVLR+RG L R   WDV+ DL+FYR P
Sbjct: 153 DSILNHVDIAIPTNNKGRKSIGLIWYLLAREVLRVRGTLSRSAPWDVMPDLYFYRDP 209



 Score = 33.5 bits (73), Expect = 0.036
 Identities = 14/24 (58%), Positives = 17/24 (70%)
 Frame = -3

Query: 792 RAVVAIENPADVXVXSSRPFGQRA 721
           R +  IENPADV V S+R +G RA
Sbjct: 65  RVIATIENPADVCVVSTRTYGHRA 88


>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score =  132 bits (319), Expect = 6e-32
 Identities = 69/117 (58%), Positives = 78/117 (66%)
 Frame = -2

Query: 709 AAHTGATXIADVSHQVLLLTRSKLHCREPRLLIVLDPAQDHQPITEASYVNIPVIALCNT 530
           AAHTGAT IA                REPRL+IV DP  D Q I EAS+VNIPVIALC+T
Sbjct: 94  AAHTGATAIAGRFTPGNFTNYITRTYREPRLIIVTDPRADAQAIKEASFVNIPVIALCDT 153

Query: 529 DSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYRXP 359
           DS L  VD+AIP N K   SIGL W+LLAREVLRLRG + R   W+V+ DL+FYR P
Sbjct: 154 DSILNHVDVAIPINNKGYKSIGLAWYLLAREVLRLRGNISRTTAWEVMPDLYFYRDP 210



 Score = 37.9 bits (84), Expect = 0.002
 Identities = 16/24 (66%), Positives = 18/24 (75%)
 Frame = -3

Query: 792 RAVVAIENPADVXVXSSRPFGQRA 721
           R +  IENPADV V SSRP+G RA
Sbjct: 66  RVIATIENPADVCVISSRPYGHRA 89


>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
           S2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 263

 Score = 42.3 bits (95), Expect = 8e-05
 Identities = 25/92 (27%), Positives = 42/92 (45%)
 Frame = -2

Query: 715 EXAAHTGATXIADVSHQVLLLTRSKLHCREPRLLIVLDPAQDHQPITEASYVNIPVIALC 536
           E     G + +   +   L+ T  K     P L+++L+P ++     EA   ++P I + 
Sbjct: 150 EVQGKLGGSILCKDNRGKLIQTDKKPSYVFPDLMVILNPLENKSACLEAQKTHVPTIGII 209

Query: 535 NTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAR 440
           +TD+  R V   IP N  S     L+  LL+R
Sbjct: 210 DTDADPRMVTYPIPANDDSLRCTDLIAGLLSR 241


>SPAC27E2.06c |||methionine-tRNA ligase,
           mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 539

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -2

Query: 577 TEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSI 467
           T A    +  + LC+ +S  RF D+A+  NTK +H I
Sbjct: 75  TVAQTEGVSPLQLCDRNSK-RFADLAVAANTKFTHFI 110


>SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 611

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = -3

Query: 423 VVCFPVTSAGMLWLICSSTVXPEESEKD 340
           V+ FP TS+G   LI S +  PEE  KD
Sbjct: 571 VIAFPKTSSGADLLIGSPSAIPEEMLKD 598


>SPAPB21F2.03 |||ribosome biogenesis protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 172

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = +2

Query: 329 ACCSSFSLSSGXTVEEQINHNIPALVTGKHTTKPQHFTCQQ 451
           A   +  LSS  T   Q+ +N P   T K   K +HF  QQ
Sbjct: 28  ASIPNVELSSTVTSNSQVLNNDPLKETKKDKRKDRHFNWQQ 68


>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -2

Query: 469 IGLMWWLLAREVLRLRGVLPRDQRWD 392
           IGL W L  REV R + +  R++ WD
Sbjct: 365 IGLKWTLKLREVERKQLLTAREKWWD 390


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,019,728
Number of Sequences: 5004
Number of extensions: 58326
Number of successful extensions: 149
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)