Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP05_T7_F20
         (803 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo...    57   3e-09
SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo...    57   3e-09
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||...    28   1.4  
SPCC14G10.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    27   4.1  
SPAC9.13c |cwf16|SPAPJ735.01c|splicing factor |Schizosaccharomyc...    27   4.1  
SPAC644.12 |cdc5||cell division control protein Cdc5|Schizosacch...    25   9.5  

>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 57.2 bits (132), Expect = 3e-09
 Identities = 31/75 (41%), Positives = 43/75 (57%)
 Frame = -1

Query: 740 RGPXIIFKQGXRVXIGAXPQHXPVWSXXXXXXXXXXXLAPGGHXGRFVIWTQSAFGRLDP 561
           RGP ++F +   + + A  ++ P              LAPGGH GRFVIWT+SAFG LD 
Sbjct: 205 RGPLVVFNEDAGI-VKAF-RNIPGVEIVNVRRLNLLQLAPGGHLGRFVIWTKSAFGLLDS 262

Query: 560 LFGSWKTPSKQKKNF 516
           +FGS    ++ KKN+
Sbjct: 263 VFGSTTEAAQLKKNY 277



 Score = 53.6 bits (123), Expect = 3e-08
 Identities = 28/80 (35%), Positives = 46/80 (57%), Gaps = 2/80 (2%)
 Frame = -2

Query: 526 RRTFNLPQPKMANTDLTRLLKSDEIRKVLRAPN-KRVIRA-TRKLNPLTNNKAMLKLNPY 353
           ++ + LP+  ++N D+TRL+ SDEI+ +++A    RV RA  +K NPL N   + +LNPY
Sbjct: 274 KKNYFLPENIISNADVTRLINSDEIQSIVKAAGPSRVKRAHVQKKNPLKNKAVLARLNPY 333

Query: 352 AAVXEEESYLRAAQKEELEG 293
           A   +    L   +  +  G
Sbjct: 334 AKAYKANVKLNTGKTPKAAG 353


>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 56.8 bits (131), Expect = 3e-09
 Identities = 31/75 (41%), Positives = 43/75 (57%)
 Frame = -1

Query: 740 RGPXIIFKQGXRVXIGAXPQHXPVWSXXXXXXXXXXXLAPGGHXGRFVIWTQSAFGRLDP 561
           RGP ++F +   + + A  ++ P              LAPGGH GRFVIWT+SAFG LD 
Sbjct: 205 RGPLVVFNEDTGI-VKAF-RNIPGVEIVNVRRLNLLQLAPGGHLGRFVIWTKSAFGLLDS 262

Query: 560 LFGSWKTPSKQKKNF 516
           +FGS    ++ KKN+
Sbjct: 263 VFGSTTEVAQLKKNY 277



 Score = 52.4 bits (120), Expect = 7e-08
 Identities = 26/61 (42%), Positives = 41/61 (67%), Gaps = 2/61 (3%)
 Frame = -2

Query: 526 RRTFNLPQPKMANTDLTRLLKSDEIRKVLRAPN-KRVIRA-TRKLNPLTNNKAMLKLNPY 353
           ++ + LP+  ++N D+TRL+ SDEI+ +++A    RV RA  +K NPL N   + +LNPY
Sbjct: 274 KKNYFLPENIISNADVTRLINSDEIQSIVKAAGPSRVKRAHVQKKNPLKNKAVLSRLNPY 333

Query: 352 A 350
           A
Sbjct: 334 A 334


>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1158

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 19/54 (35%), Positives = 33/54 (61%)
 Frame = +2

Query: 350 RVRIEFQHRLVIGERVQFACSTDHAFVGSTEDLPDLIRLEKTCEVSVGHLWLGQ 511
           +V +EF+ RL IG+RV+       AF+GS E +  L+ + +T + ++  L LG+
Sbjct: 207 QVAVEFRKRLNIGDRVKDGLLYKDAFLGS-EAVDVLMHIVRTTDRNLA-LLLGR 258


>SPCC14G10.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 497

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -2

Query: 604 VSSSGLSPHSAGLTPYSGHGRHHRNK 527
           VS S    HS    P+S  GRH+R K
Sbjct: 120 VSRSSSIGHSGSTAPWSSVGRHNRKK 145


>SPAC9.13c |cwf16|SPAPJ735.01c|splicing factor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = -2

Query: 376 AMLKLNPYAAVXEEESYLRAAQKEELE 296
           A+LK + Y ++ EEES  R  ++EE++
Sbjct: 180 ALLKEDAYGSIEEEESKKRKFEEEEID 206


>SPAC644.12 |cdc5||cell division control protein
           Cdc5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 757

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -2

Query: 532 NKRRTFNLPQPKMANTDLTRLLK 464
           +KRR  NLP P ++  +L +++K
Sbjct: 307 SKRRKLNLPSPTVSQDELDKVVK 329


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,286,724
Number of Sequences: 5004
Number of extensions: 38307
Number of successful extensions: 95
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)