Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP05_T7_F17
         (812 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    32   0.11 
SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein ...    28   1.4  
SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6 |Schizosacc...    27   3.2  
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T...    27   3.2  
SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase Ppk38|Schizo...    27   4.2  
SPAC1250.03 |ubc14||ubiquitin conjugating enzyme Ubc14|Schizosac...    27   4.2  
SPBC29B5.04c |||conserved fungal protein|Schizosaccharomyces pom...    26   7.3  
SPAC458.03 |||nuclear telomere cap complex subunit |Schizosaccha...    26   7.3  
SPAC57A7.07c |||homocysteine methyltransferase |Schizosaccharomy...    25   9.7  
SPBC530.06c |||translation initiation factor eIF3 alpha subunit ...    25   9.7  
SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces pombe...    25   9.7  

>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 31.9 bits (69), Expect = 0.11
 Identities = 18/56 (32%), Positives = 22/56 (39%), Gaps = 1/56 (1%)
 Frame = -1

Query: 764  PLXPXAXXLAVSPLCIKPPXP-CDXRXHQPRSSNPXIPYTNHPQT*HPFPSIPLTP 600
            P  P A   A +P    PP P      H P +S   +P    P   HP P  P+ P
Sbjct: 909  PPPPTASMTASAPAIASPPPPKVGETYHPPTASGTRVPPVQQPS--HPNPYTPVAP 962


>SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 570

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +2

Query: 101 RNMARIYQLAVDLGGRERSLNRCREKSSFVVLKNRPDVVVQYG 229
           R +A  Y+  + LGG++ S+    EK  F  + N  DV+ + G
Sbjct: 112 RALADKYKHVLVLGGKDNSVRETAEKYGFKSVINELDVIAKLG 154


>SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 745

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = -2

Query: 256 CYFSTPPFDTVLYDNIRTVLKDNKTALLSASI 161
           CY   P + + L ++I+T+L DN   ++ A++
Sbjct: 168 CYSLDPSYKSQLEEHIKTLLSDNSPIVVPAAL 199



 Score = 25.8 bits (54), Expect = 7.3
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -3

Query: 651 HQPPPDLTSISINPPDAVLEGVR 583
           ++P P+   +S  PPD+V EG++
Sbjct: 599 YEPIPNWADVSDLPPDSVREGIK 621


>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 988

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 20/78 (25%), Positives = 34/78 (43%)
 Frame = -2

Query: 355 KVKIADNNLVTHKELALKVSSIIGTRVYVFDPSCYFSTPPFDTVLYDNIRTVLKDNKTAL 176
           K K+ D   V  K   +  +S   T+ +V +   YF   PF+ V+       +K + T  
Sbjct: 608 KKKLKDPEFVIRKYATIHATSDRATKNFVSEAFSYFDMVPFEKVVQ---LLSMKTSDTLF 664

Query: 175 LSASIQASLPSSEIYRQL 122
           +      +  SSEI++ L
Sbjct: 665 VDFVDYWTKSSSEIFKML 682


>SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase
           Ppk38|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 650

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 19/55 (34%), Positives = 24/55 (43%)
 Frame = +2

Query: 473 HHSLENKGAKPLXPCPVTRG*DTLMEPLMTTEALTPARTPSSTASGGLMEMDVKS 637
           H S  NK A    P P      ++  P     A TP+   SS A  GL E++ KS
Sbjct: 511 HTSSLNKVAAAPAPVPKPVNLKSVENPQNNISAPTPSSLQSSNAPVGLGEVESKS 565


>SPAC1250.03 |ubc14||ubiquitin conjugating enzyme
           Ubc14|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 155

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -2

Query: 466 KLRALLAVIPRILRSPPPTHPLIEDV 389
           KLR++L  I ++LR P P  PL+  +
Sbjct: 105 KLRSVLEQILQLLREPNPDDPLVASI 130


>SPBC29B5.04c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 605

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 15/51 (29%), Positives = 22/51 (43%)
 Frame = -3

Query: 702 LRXSXTSTPIIKSPDSIHQPPPDLTSISINPPDAVLEGVRAGVKASVVIRG 550
           +  S TS      P S+H  P DL    +N P+  L   R+  ++   I G
Sbjct: 121 IELSSTSKTENDPPLSLHTTPDDLQGNGVNVPNPSLSASRSWYQSGYGISG 171


>SPAC458.03 |||nuclear telomere cap complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 868

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -1

Query: 143 LRDLPPVGRSSPCFFRLLWSLRKILIPYSSQFW 45
           L++L  +G  SPC  RL   L  +++P    FW
Sbjct: 21  LKELQHIGVPSPCNLRLYHELISVIVP---TFW 50


>SPAC57A7.07c |||homocysteine methyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 308

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 13/27 (48%), Positives = 14/27 (51%)
 Frame = -2

Query: 331 LVTHKELALKVSSIIGTRVYVFDPSCY 251
           +V H E  LKV  II T  Y  D S Y
Sbjct: 37  VVKHHEEFLKVCDIISTFTYQLDASIY 63


>SPBC530.06c |||translation initiation factor eIF3 alpha subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1173

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -2

Query: 490 IFK*MMNHKLRALLAVIPRILRSPPPTHPL 401
           IF   + H  R  LAV+P++LRS   +H L
Sbjct: 752 IFIRSIKHVFRNFLAVVPQVLRSHLLSHLL 781


>SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 488

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = +2

Query: 116 IYQLAVDLGGRERSLNRCREKSSFVVLKNRPDVV 217
           ++Q A+ LG   RS  RC  KSSF+    + DVV
Sbjct: 33  LHQQAL-LGRNGRSSKRCSPKSSFIRNSPKIDVV 65


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,928,935
Number of Sequences: 5004
Number of extensions: 59588
Number of successful extensions: 173
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 396433620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)