Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP05_T7_F17
(812 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0146 + 26969011-26969995,26970878-26970930 36 0.038
02_05_0814 - 31970558-31971126,31971242-31971413 31 0.82
02_02_0369 - 9505330-9505652,9507262-9507532,9507649-9507690,950... 30 1.9
01_06_1682 - 39130696-39131705,39132355-39132583 30 2.5
12_01_0302 - 2286171-2286341,2286747-2286968 29 4.4
10_05_0043 + 8503979-8504407,8506484-8506624,8506865-8506975,850... 29 4.4
09_04_0737 - 19822822-19822973,19823069-19823135,19823666-198238... 29 5.8
07_03_1160 - 24430240-24431268 29 5.8
04_04_1125 + 31085106-31085714 29 5.8
02_05_0640 - 30558523-30559027,30559123-30559252,30559388-305598... 29 5.8
08_02_0672 - 19904353-19904839,19905646-19905704,19906137-199063... 28 7.7
07_03_1284 + 25463476-25463557,25465088-25465220,25465307-254653... 28 7.7
05_03_0635 - 16446805-16447716 28 7.7
>01_06_0146 + 26969011-26969995,26970878-26970930
Length = 345
Score = 35.9 bits (79), Expect = 0.038
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = -1
Query: 713 PPXPCDXRXHQPRSSNPXIPYTNHPQT*HPFPSIPLTP 600
PP P D R QPR++ P P + P P PS+P +P
Sbjct: 88 PPLPHDNRTPQPRAAPPPAPAPDQPAPPSPPPSLPPSP 125
>02_05_0814 - 31970558-31971126,31971242-31971413
Length = 246
Score = 31.5 bits (68), Expect = 0.82
Identities = 16/55 (29%), Positives = 24/55 (43%)
Frame = -1
Query: 680 PRSSNPXIPYTNHPQT*HPFPSIPLTPY*KEFAPGLKPPLSSEAPSAYLTPSSLG 516
P + P PY + P P+PS P+T + P S A + +TP + G
Sbjct: 157 PSTPTPTTPYPSTPMPTTPYPSTPMTTPTTPYTTPTSPACSGGAGATPVTPVTPG 211
>02_02_0369 -
9505330-9505652,9507262-9507532,9507649-9507690,
9508416-9508458,9508853-9508860
Length = 228
Score = 30.3 bits (65), Expect = 1.9
Identities = 24/78 (30%), Positives = 28/78 (35%), Gaps = 4/78 (5%)
Frame = -1
Query: 713 PPXPCDXRXHQPRSSNPX--IPYTNHPQT*HPFPSIPLTPY*KEFAPGLKPPLSSEAPSA 540
P P + P S P +P + P P P P P APG P S P+
Sbjct: 127 PNVPTMPQTGAPPGSMPPGSMPPGSMPMQMAPLPRPPTLPPPTSGAPGAPIPNSGAPPAM 186
Query: 539 YLT--PSSLGMXKGVSPP 492
Y T P G G PP
Sbjct: 187 YQTNPPQPAGPTSGAPPP 204
>01_06_1682 - 39130696-39131705,39132355-39132583
Length = 412
Score = 29.9 bits (64), Expect = 2.5
Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 4/69 (5%)
Frame = -1
Query: 683 QPRSSNPXIPYTNHPQT*HPFPSIPLT----PY*KEFAPGLKPPLSSEAPSAYLTPSSLG 516
+P P PY + P + + +PS P P +F+P PP + P ++ PS
Sbjct: 176 KPHIQPPIFPYNSPPPSPYQYPSPPFNYKSPPLPNQFSP---PPFNKFPPPSHQYPSPPQ 232
Query: 515 MXKGVSPPY 489
PPY
Sbjct: 233 SSYHSPPPY 241
>12_01_0302 - 2286171-2286341,2286747-2286968
Length = 130
Score = 29.1 bits (62), Expect = 4.4
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +1
Query: 82 RLQRSRKKHGEDLPTGGRSRRKGEKLE*MQREEQ 183
RL+R RK + D+ G + +GEKLE + +E+
Sbjct: 57 RLERLRKGYARDVRAAGAMKVRGEKLENWREKEK 90
>10_05_0043 +
8503979-8504407,8506484-8506624,8506865-8506975,
8507746-8508330
Length = 421
Score = 29.1 bits (62), Expect = 4.4
Identities = 17/64 (26%), Positives = 27/64 (42%)
Frame = -1
Query: 680 PRSSNPXIPYTNHPQT*HPFPSIPLTPY*KEFAPGLKPPLSSEAPSAYLTPSSLGMXKGV 501
P +++P P+ HP +P+P P AP +P ++ + Y T S G
Sbjct: 16 PPAADPHHPHYPHPYAGYPYPYAAYNP----AAPASEPATAASSSYYYPTAVSAAASAGQ 71
Query: 500 SPPY 489
PY
Sbjct: 72 YDPY 75
>09_04_0737 -
19822822-19822973,19823069-19823135,19823666-19823822,
19824003-19824177,19824364-19824481,19824676-19824874,
19824983-19825062,19825141-19825257,19825791-19825961,
19826121-19826597
Length = 570
Score = 28.7 bits (61), Expect = 5.8
Identities = 18/49 (36%), Positives = 25/49 (51%)
Frame = +2
Query: 74 FYVDSKGVGRNMARIYQLAVDLGGRERSLNRCREKSSFVVLKNRPDVVV 220
F+VD G G + ++++LAV+ G R CR VV DVVV
Sbjct: 93 FHVDPTGDGSSFLQLHRLAVE-GTRRLLAACCRSGVRTVVYTGSADVVV 140
>07_03_1160 - 24430240-24431268
Length = 342
Score = 28.7 bits (61), Expect = 5.8
Identities = 14/40 (35%), Positives = 18/40 (45%)
Frame = -1
Query: 719 IKPPXPCDXRXHQPRSSNPXIPYTNHPQT*HPFPSIPLTP 600
I P PC + QP+ P +P N P P P+ P P
Sbjct: 99 IPPVQPCPDQPPQPKPDGPPLPNPNQPP--QPNPNGPPKP 136
>04_04_1125 + 31085106-31085714
Length = 202
Score = 28.7 bits (61), Expect = 5.8
Identities = 21/67 (31%), Positives = 24/67 (35%)
Frame = -1
Query: 728 PLCIKPPXPCDXRXHQPRSSNPXIPYTNHPQT*HPFPSIPLTPY*KEFAPGLKPPLSSEA 549
P PP PC P + P P T P T P P TP P PP +
Sbjct: 35 PTTKPPPPPCQPPPPTPTPATPTTPPT--PWTPPPATPTPPTPTPWTPTPATPPP-TPAT 91
Query: 548 PSAYLTP 528
P+ TP
Sbjct: 92 PATPTTP 98
>02_05_0640 - 30558523-30559027,30559123-30559252,30559388-30559868,
30560292-30560346,30560537-30560613,30561228-30561315,
30561490-30561593,30562050-30562231,30562347-30563109,
30563195-30563438,30564513-30564658,30565158-30565283,
30565404-30565517,30565595-30565762,30566283-30566528,
30566605-30566767,30566970-30567064,30567274-30567357,
30567769-30568055,30568359-30568572,30568923-30569140,
30569386-30569623,30570312-30571118,30571202-30571301,
30571694-30571737,30571824-30571973
Length = 1942
Score = 28.7 bits (61), Expect = 5.8
Identities = 20/65 (30%), Positives = 30/65 (46%)
Frame = -2
Query: 241 PPFDTVLYDNIRTVLKDNKTALLSASIQASLPSSEIYRQLVDPRHVSSDSFGVYVKS*SL 62
P F T+LY ++KD S+ L S+ Y L+DP S D+ + +
Sbjct: 1349 PEFHTLLYAEAARIIKDCWWLADSSRPVKELDSAVGYA-LLDPTWASQDNTSTAIGNIVA 1407
Query: 61 ILHSF 47
+LHSF
Sbjct: 1408 LLHSF 1412
>08_02_0672 -
19904353-19904839,19905646-19905704,19906137-19906352,
19906845-19907422,19907506-19908180,19908263-19908653,
19909469-19909621,19909727-19909980,19911023-19911479
Length = 1089
Score = 28.3 bits (60), Expect = 7.7
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -1
Query: 680 PRSSNPXIPYTNH-PQT*HPFPSIPLTPY*KEFAPGLKPPLSSEAPS 543
P ++ P P T P T +P PS L P P + PP+ S APS
Sbjct: 31 PATNTPPNPATTPTPLTPNPNPSPTLPPPPMSTPPVVAPPMHSFAPS 77
>07_03_1284 +
25463476-25463557,25465088-25465220,25465307-25465378,
25465476-25465544,25465629-25465700,25465792-25465860,
25466155-25466220,25466299-25466364,25466452-25466786,
25466931-25467214,25467796-25468067,25468152-25468287,
25468625-25468755,25468890-25469046,25469185-25469327,
25470105-25470190,25471530-25472962,25474563-25474712,
25475221-25475322,25475467-25475568
Length = 1319
Score = 28.3 bits (60), Expect = 7.7
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 6/60 (10%)
Frame = -3
Query: 705 PLRXSXTSTPIIKSPDSIHQPPPDLTSISINPPD------AVLEGVRAGVKASVVIRGSI 544
P + +P KSP S QP P T+++ NP D + G AG+ +V+ G+I
Sbjct: 226 PYQSPPYKSPPYKSPQS-RQPAPPTTTVNNNPSDDGRKHSKLSGGAIAGIVVCLVVVGAI 284
>05_03_0635 - 16446805-16447716
Length = 303
Score = 28.3 bits (60), Expect = 7.7
Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = -3
Query: 645 PPPDL-TSISINPPDAVLEGVRAGVKASVVIRGS 547
PPPD TS+S++PP A A + AS V+ GS
Sbjct: 198 PPPDPPTSLSLSPPGA----AAAAISASTVVGGS 227
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,779,915
Number of Sequences: 37544
Number of extensions: 470845
Number of successful extensions: 1555
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1464
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1550
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2221181676
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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