Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP05_T7_F12
         (800 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58738-4|AAB00604.1|  358|Caenorhabditis elegans Hypothetical pr...    32   0.42 
AF043700-1|AAB97571.2|  328|Caenorhabditis elegans Hypothetical ...    32   0.42 
AC024848-4|AAK68543.2| 1020|Caenorhabditis elegans Hypothetical ...    29   3.9  
Z83230-4|CAB05744.1|  275|Caenorhabditis elegans Hypothetical pr...    28   8.9  

>U58738-4|AAB00604.1|  358|Caenorhabditis elegans Hypothetical
           protein F31A9.6 protein.
          Length = 358

 Score = 32.3 bits (70), Expect = 0.42
 Identities = 14/38 (36%), Positives = 24/38 (63%)
 Frame = -2

Query: 646 LFYKTCIRPVMTYASVVFAHAARTHLKSLQVIQSRFCR 533
           L YKT IRP + Y +VV +   ++  K+++ +Q+ F R
Sbjct: 222 LLYKTFIRPRLEYGTVVSSPTKKSDEKTIESVQNAFTR 259


>AF043700-1|AAB97571.2|  328|Caenorhabditis elegans Hypothetical
           protein K09H9.4 protein.
          Length = 328

 Score = 32.3 bits (70), Expect = 0.42
 Identities = 14/38 (36%), Positives = 24/38 (63%)
 Frame = -2

Query: 646 LFYKTCIRPVMTYASVVFAHAARTHLKSLQVIQSRFCR 533
           L YKT IRP + Y +VV +   ++  K+++ +Q+ F R
Sbjct: 192 LLYKTFIRPRLEYGTVVSSPTKKSDEKAIESVQNAFTR 229


>AC024848-4|AAK68543.2| 1020|Caenorhabditis elegans Hypothetical
            protein Y67D8A.1 protein.
          Length = 1020

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 19/63 (30%), Positives = 29/63 (46%)
 Frame = -1

Query: 353  GKPSTSPKARHYGSS*SINGAFRHHKHRSPSSSNPSLATKGSTSELTHRHSPLSFSPDLL 174
            G+ S+  K RH G S S   +  HH H+   +    LAT  +    +   +P + +P  L
Sbjct: 944  GRASSEKKKRHVGGSSS--SSQHHHHHQQQQTPLLRLATPLTPEPSSGTVTPRAITPSPL 1001

Query: 173  SGS 165
            S S
Sbjct: 1002 SSS 1004


>Z83230-4|CAB05744.1|  275|Caenorhabditis elegans Hypothetical
           protein F56A8.4 protein.
          Length = 275

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -1

Query: 656 NKVTLLQNLHTPRHDVCKRSVRSRSPHPLEIPSGYSI 546
           NKV +L++L++ R +  +R      P PL+   GY I
Sbjct: 206 NKVQILEDLNSKRFEKGRRQEIYPGPKPLDCKLGYDI 242


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,806,749
Number of Sequences: 27780
Number of extensions: 356159
Number of successful extensions: 987
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 942
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 986
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1956310428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)