Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP05_T7_F07
(766 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 232 4e-62
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 116 4e-27
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 102 5e-23
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 98 1e-21
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 95 1e-20
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 69 6e-13
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 65 9e-12
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 65 9e-12
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 44 2e-05
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 28 1.7
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 26 6.8
SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha... 26 6.8
SPAC1B3.17 |clr2||chromatin silencing protein Clr2|Schizosacchar... 25 9.0
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 232 bits (568), Expect = 4e-62
Identities = 106/121 (87%), Positives = 112/121 (92%)
Frame = -3
Query: 656 FRCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQ 477
FR PEALFQPS LG+E GIHE TYNSIMKCDVDIRKDLY N V+SGGTTMYPGIADRMQ
Sbjct: 255 FRAPEALFQPSALGLENAGIHEATYNSIMKCDVDIRKDLYGNVVMSGGTTMYPGIADRMQ 314
Query: 476 KEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKC 297
KEI ALAPS+MK+KI+APPERKYSVWIGGSILASLSTFQQMWISKQEYDESGP IV+RKC
Sbjct: 315 KEIQALAPSSMKVKIVAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPGIVYRKC 374
Query: 296 F 294
F
Sbjct: 375 F 375
Score = 31.1 bits (67), Expect = 0.18
Identities = 14/26 (53%), Positives = 16/26 (61%)
Frame = -2
Query: 765 YVVXTXXQEMATXASSXSLEKSYDFP 688
YV QE+ T A S SLEKSY+ P
Sbjct: 218 YVALDFEQELQTAAQSSSLEKSYELP 243
Score = 29.1 bits (62), Expect = 0.73
Identities = 12/12 (100%), Positives = 12/12 (100%)
Frame = -1
Query: 694 LPDGQVITIGNE 659
LPDGQVITIGNE
Sbjct: 242 LPDGQVITIGNE 253
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 116 bits (279), Expect = 4e-27
Identities = 52/121 (42%), Positives = 81/121 (66%)
Frame = -3
Query: 656 FRCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQ 477
F PE LF P +G EA G+H + SI+ D+D+R LY+N VLSGG+T+ G +R
Sbjct: 260 FSAPEVLFNPEMMGSEASGLHIQLFKSILLSDIDLRSTLYSNIVLSGGSTLLRGFGERFI 319
Query: 476 KEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKC 297
E+ A++ ++KI A PER ++ W+GGSILASLSTF+++ I+ +EY ++ +++ R+
Sbjct: 320 SELRAISGKKNQVKIYASPERMHNAWLGGSILASLSTFRRLLITSEEY-KNDQNVIFRRR 378
Query: 296 F 294
F
Sbjct: 379 F 379
Score = 25.4 bits (53), Expect = 9.0
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -1
Query: 697 RLPDGQVITIGNEXSVAQRLSSNP 626
+LPD Q IT+G E A + NP
Sbjct: 246 QLPDNQTITLGTECFSAPEVLFNP 269
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 102 bits (245), Expect = 5e-23
Identities = 53/130 (40%), Positives = 74/130 (56%), Gaps = 11/130 (8%)
Frame = -3
Query: 677 HHYRKRXFRCPEALFQPSFLGMEAC---------GIHETTYNSIMKCDVDIRKDLYANTV 525
H + + FR E LF PSF + G+HE Y SI+ CD ++R L N V
Sbjct: 289 HKFGQERFRISEILFNPSFSASRSAETTPPQGSVGLHELVYQSILACDSELRSPLLNNIV 348
Query: 524 LSGGTTMYPGIADRMQKEITALAP-STMKIKII-APPERKYSVWIGGSILASLSTFQQMW 351
++GGT++ PG+++R+Q E+ LA S + + +VW GGSILASL FQ +W
Sbjct: 349 VTGGTSLIPGLSERLQAEVQRLATGSRINVHTAETASATSNAVWFGGSILASLDNFQHLW 408
Query: 350 ISKQEYDESG 321
+SKQEYDE G
Sbjct: 409 VSKQEYDEVG 418
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 97.9 bits (233), Expect = 1e-21
Identities = 52/124 (41%), Positives = 77/124 (62%), Gaps = 12/124 (9%)
Frame = -3
Query: 656 FRCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQ 477
+ CPE LFQP +G E G+ E +++I DVDIRK LY VLSGG++MY G+ R++
Sbjct: 255 YECPECLFQPHLVGSEQPGLSEFIFDTIQAADVDIRKYLYRAIVLSGGSSMYAGLPSRLE 314
Query: 476 KEITAL--------APSTM---KIKIIAPPERKYSVWIGGSILAS-LSTFQQMWISKQEY 333
KEI L P+ + K+KI P R+++V+IGG++LA ++ MW+SK E+
Sbjct: 315 KEIKQLWFERVLHGDPARLPNFKVKIEDAPRRRHAVFIGGAVLADIMAQNDHMWVSKAEW 374
Query: 332 DESG 321
+E G
Sbjct: 375 EEYG 378
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 95.1 bits (226), Expect = 1e-20
Identities = 47/108 (43%), Positives = 71/108 (65%), Gaps = 6/108 (5%)
Frame = -3
Query: 602 GIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAP 423
GI + N I +CDVDIR L N ++ GGT++ G + R+Q E++ L P + ++KI A
Sbjct: 326 GIPQLFQNCISECDVDIRASLLNNVIVCGGTSLMQGFSLRLQNELSKLYPGS-RLKIHAS 384
Query: 422 P---ERKYSVWIGGSILASLSTFQQMWISKQEYDESGP---SIVHRKC 297
ER Y+ W+GGSIL+SL TF Q+WIS+QEY+E G +++ ++C
Sbjct: 385 GHVVERSYASWLGGSILSSLGTFHQLWISRQEYEEHGSDRLALIEKRC 432
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 69.3 bits (162), Expect = 6e-13
Identities = 31/122 (25%), Positives = 61/122 (50%)
Frame = -3
Query: 674 HYRKRXFRCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPG 495
H R PE +F PS +G++ GI E + + + ++ ++ L +N +++GG PG
Sbjct: 590 HLNVEQIRVPEVIFSPSIVGIDQAGILEIMRSILQRHSLEEQQKLVSNVLITGGLGSLPG 649
Query: 494 IADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPS 315
+ R+++E+T++ P I + W G S + F+ ++++EY E GP
Sbjct: 650 METRIKRELTSIMPVGSSINVFRASNPLLDAWKGASEWSVTEKFKAAKVTREEYLEKGPE 709
Query: 314 IV 309
+
Sbjct: 710 YI 711
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 65.3 bits (152), Expect = 9e-12
Identities = 37/119 (31%), Positives = 57/119 (47%)
Frame = -3
Query: 656 FRCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQ 477
F PE LF PS + + GI E S+ +I+ L N V GG +PG R+
Sbjct: 281 FMIPELLFSPSDIEIREAGIPEAVMQSVTHFPENIQAMLLENVVTIGGNCKFPGFHKRLS 340
Query: 476 KEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRK 300
E+ +LAP+ ++K+ P + W S + L + I++ EY E G +I+ RK
Sbjct: 341 SELRSLAPANWEVKVFEPSDPICFPWKKASHM-PLEHWNANKITRSEYSEHGANIMTRK 398
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 65.3 bits (152), Expect = 9e-12
Identities = 37/133 (27%), Positives = 62/133 (46%), Gaps = 15/133 (11%)
Frame = -3
Query: 656 FRCPEALFQPSFLGME-ACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRM 480
F PE F P + + E N + +D+RK LY N VLSGG+T++ +R+
Sbjct: 287 FLAPEIFFNPEIASSDFLTPLPELVDNVVQSSPIDVRKGLYKNIVLSGGSTLFKNFGNRL 346
Query: 479 QKEITALAPST--------------MKIKIIAPPERKYSVWIGGSILASLSTFQQMWISK 342
Q+++ + + + +I+ ++ +VW GGS+LA F +K
Sbjct: 347 QRDLKRIVDERIHRSEMLSGAKSGGVDVNVISHKRQRNAVWFGGSLLAQTPEFGSYCHTK 406
Query: 341 QEYDESGPSIVHR 303
+Y+E G SI R
Sbjct: 407 ADYEEYGASIARR 419
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 44.4 bits (100), Expect = 2e-05
Identities = 20/86 (23%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Frame = -3
Query: 548 KDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPP---ERKYSVWIGGSILA 378
K+LY++ ++ GG +PG A +++ I + + I +I PP + ++ W G I
Sbjct: 527 KNLYSSILIVGGAGQFPGFAHLLEERIHSKRANIPTISVIPPPRSMDAQFVAWKGACIYN 586
Query: 377 SLSTFQQMWISKQEYDESGPSIVHRK 300
+ ++WI ++ G ++ K
Sbjct: 587 RIRIVSELWIKNSDWKMLGSRVLQYK 612
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 27.9 bits (59), Expect = 1.7
Identities = 12/37 (32%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
Frame = -3
Query: 401 WIGGSILASLSTFQQM---WISKQEYDESGPSIVHRK 300
++GGSI+A S + + +++ +EY + GP+ +H K
Sbjct: 486 FLGGSIVAKTSFNESVSSHYVTLEEYAQHGPTAIHTK 522
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 25.8 bits (54), Expect = 6.8
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -1
Query: 409 TPYGSVDRSSPPSLPSNRCGSRNRSTTSLAPP 314
TP + PPS+PS+R R S ++ APP
Sbjct: 223 TPTSTSAPPIPPSIPSSRPPERVPSLSAPAPP 254
>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 617
Score = 25.8 bits (54), Expect = 6.8
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -3
Query: 476 KEITALAPSTMKIKIIAPPERKYSVWIGGSILASLST 366
KEI++ A S + + + P E+ W ILA L+T
Sbjct: 212 KEISSQARSNIALPTLRPQEKNLIDWRDRKILAPLTT 248
>SPAC1B3.17 |clr2||chromatin silencing protein
Clr2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 537
Score = 25.4 bits (53), Expect = 9.0
Identities = 17/62 (27%), Positives = 30/62 (48%)
Frame = -2
Query: 519 RWYHHVPWNRRPYAKGNHSSRPIDNED*DHCSSREEVLRMDRWIDPRLPLYLPTDVDLET 340
RWY PW + KG+ + +E + SSR + + W+D YL +++D+ +
Sbjct: 483 RWYE--PW----FVKGDLN---YTSEVKERTSSRLSAVGSENWVDDDFYEYLLSEIDMVS 533
Query: 339 GV 334
V
Sbjct: 534 AV 535
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,837,498
Number of Sequences: 5004
Number of extensions: 56927
Number of successful extensions: 172
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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