Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP05_T7_E07
         (692 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X85133-1|CAA59445.1|  948|Homo sapiens RB protein binding protei...    31   5.2  
BC063524-1|AAH63524.1|  919|Homo sapiens RBBP6 protein protein.        31   5.2  
AY072922-1|AAL68925.1| 1625|Homo sapiens p53-associated cellular...    31   5.2  
AF352051-1|AAL05625.1| 1616|Homo sapiens proliferation potential...    31   5.2  
AB112075-1|BAC77637.1| 1758|Homo sapiens retinoblastoma binding ...    31   5.2  
AB112074-1|BAC77636.1| 1792|Homo sapiens retinoblastoma binding ...    31   5.2  

>X85133-1|CAA59445.1|  948|Homo sapiens RB protein binding protein
           protein.
          Length = 948

 Score = 30.7 bits (66), Expect = 5.2
 Identities = 16/46 (34%), Positives = 20/46 (43%)
 Frame = +1

Query: 133 PPPPPXGXPPXETEVVLTEPYFRXPXTXRNLXLIXPGTXSGTPXIP 270
           PPPPP   PP        +P  R P + +   L+ P T S T   P
Sbjct: 161 PPPPPPIPPPRPLIQRNLQPLMRSPISRQQDPLMIPVTSSSTHPAP 206


>BC063524-1|AAH63524.1|  919|Homo sapiens RBBP6 protein protein.
          Length = 919

 Score = 30.7 bits (66), Expect = 5.2
 Identities = 16/46 (34%), Positives = 20/46 (43%)
 Frame = +1

Query: 133 PPPPPXGXPPXETEVVLTEPYFRXPXTXRNLXLIXPGTXSGTPXIP 270
           PPPPP   PP        +P  R P + +   L+ P T S T   P
Sbjct: 337 PPPPPPIPPPRPLIQRNLQPLMRSPISRQQDPLMIPVTSSSTHPAP 382


>AY072922-1|AAL68925.1| 1625|Homo sapiens p53-associated cellular
           protein PACT protein.
          Length = 1625

 Score = 30.7 bits (66), Expect = 5.2
 Identities = 16/46 (34%), Positives = 20/46 (43%)
 Frame = +1

Query: 133 PPPPPXGXPPXETEVVLTEPYFRXPXTXRNLXLIXPGTXSGTPXIP 270
           PPPPP   PP        +P  R P + +   L+ P T S T   P
Sbjct: 204 PPPPPPIPPPRPLIQRNLQPLMRSPISRQQDPLMIPVTSSSTHPAP 249


>AF352051-1|AAL05625.1| 1616|Homo sapiens proliferation
           potential-related protein protein.
          Length = 1616

 Score = 30.7 bits (66), Expect = 5.2
 Identities = 16/46 (34%), Positives = 20/46 (43%)
 Frame = +1

Query: 133 PPPPPXGXPPXETEVVLTEPYFRXPXTXRNLXLIXPGTXSGTPXIP 270
           PPPPP   PP        +P  R P + +   L+ P T S T   P
Sbjct: 161 PPPPPPIPPPRPLIQRNLQPLMRSPISRQQDPLMIPVTSSSTHPAP 206


>AB112075-1|BAC77637.1| 1758|Homo sapiens retinoblastoma binding
           protein 6 isoform 2 protein.
          Length = 1758

 Score = 30.7 bits (66), Expect = 5.2
 Identities = 16/46 (34%), Positives = 20/46 (43%)
 Frame = +1

Query: 133 PPPPPXGXPPXETEVVLTEPYFRXPXTXRNLXLIXPGTXSGTPXIP 270
           PPPPP   PP        +P  R P + +   L+ P T S T   P
Sbjct: 337 PPPPPPIPPPRPLIQRNLQPLMRSPISRQQDPLMIPVTSSSTHPAP 382


>AB112074-1|BAC77636.1| 1792|Homo sapiens retinoblastoma binding
           protein 6 isoform 1 protein.
          Length = 1792

 Score = 30.7 bits (66), Expect = 5.2
 Identities = 16/46 (34%), Positives = 20/46 (43%)
 Frame = +1

Query: 133 PPPPPXGXPPXETEVVLTEPYFRXPXTXRNLXLIXPGTXSGTPXIP 270
           PPPPP   PP        +P  R P + +   L+ P T S T   P
Sbjct: 337 PPPPPPIPPPRPLIQRNLQPLMRSPISRQQDPLMIPVTSSSTHPAP 382


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 79,651,237
Number of Sequences: 237096
Number of extensions: 1694928
Number of successful extensions: 4345
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2305
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3830
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7951235188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)