Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP05_T7_E01
         (782 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   3.2  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    23   4.2  
AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex det...    22   7.4  
AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex det...    22   7.4  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    22   7.4  
AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    21   9.8  
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    21   9.8  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    21   9.8  
AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex det...    21   9.8  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +2

Query: 137 AESTTGSETRPTEKIRRETQ 196
           A  TTG+ T PT ++R+  Q
Sbjct: 252 AAMTTGTTTIPTRRLRKRRQ 271



 Score = 22.6 bits (46), Expect = 4.2
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = -2

Query: 757  TPTNFYHPPP 728
            TP NF++PPP
Sbjct: 1159 TPFNFWNPPP 1168


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = +3

Query: 426 RSGTNNTTRSMTSGSSKQANKKAASFRGGK 515
           RS T+NT+++       +++   + FRG K
Sbjct: 95  RSNTSNTSKTFILSDKLESSDDTSLFRGPK 124


>AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 8/28 (28%), Positives = 18/28 (64%)
 Frame = +3

Query: 426 RSGTNNTTRSMTSGSSKQANKKAASFRG 509
           RS T+NT++++   +  +++   + FRG
Sbjct: 90  RSSTSNTSKTVILSNKLESSDDISLFRG 117


>AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 8/28 (28%), Positives = 18/28 (64%)
 Frame = +3

Query: 426 RSGTNNTTRSMTSGSSKQANKKAASFRG 509
           RS T+NT++++   +  +++   + FRG
Sbjct: 90  RSNTSNTSKTVILSNKLESSDDISLFRG 117


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 8/28 (28%), Positives = 18/28 (64%)
 Frame = +3

Query: 426 RSGTNNTTRSMTSGSSKQANKKAASFRG 509
           RS T+NT++++   +  +++   + FRG
Sbjct: 90  RSNTSNTSKTIILSNKLESSDDISLFRG 117


>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 8/28 (28%), Positives = 17/28 (60%)
 Frame = +3

Query: 426 RSGTNNTTRSMTSGSSKQANKKAASFRG 509
           RS T+NT++++      +++   + FRG
Sbjct: 90  RSNTSNTSKTVILSDKLESSDDISLFRG 117


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 8/28 (28%), Positives = 17/28 (60%)
 Frame = +3

Query: 426 RSGTNNTTRSMTSGSSKQANKKAASFRG 509
           RS T+NT++++      +++   + FRG
Sbjct: 90  RSNTSNTSKTVILSDKLESSDDISLFRG 117


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 8/28 (28%), Positives = 17/28 (60%)
 Frame = +3

Query: 426 RSGTNNTTRSMTSGSSKQANKKAASFRG 509
           RS T+NT++++      +++   + FRG
Sbjct: 90  RSNTSNTSKTVILSDKLESSDDISLFRG 117


>AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex
           determiner protein.
          Length = 410

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 8/28 (28%), Positives = 17/28 (60%)
 Frame = +3

Query: 426 RSGTNNTTRSMTSGSSKQANKKAASFRG 509
           RS T+NT++++      +++   + FRG
Sbjct: 90  RSNTSNTSKTVILSDKLESSDDISLFRG 117


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,837
Number of Sequences: 438
Number of extensions: 3957
Number of successful extensions: 12
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24639531
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)