Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP05_T7_D18
         (777 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G7.11 |||mitochondrial inner membrane protein|Schizosaccha...    35   0.011
SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit Sf...    29   0.56 
SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar ...    28   1.7  
SPCC4G3.08 |psk1||serine/threonine protein kinase Psk1|Schizosac...    28   1.7  
SPBC25B2.09c |||arginine-tRNA ligase|Schizosaccharomyces pombe|c...    27   4.0  
SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|...    26   5.2  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   9.2  

>SPAC13G7.11 |||mitochondrial inner membrane
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 269

 Score = 35.1 bits (77), Expect = 0.011
 Identities = 22/96 (22%), Positives = 44/96 (45%), Gaps = 2/96 (2%)
 Frame = -3

Query: 589 DEDYDSKKFISHAQDIYIKAHESLVNNDKRALRLYVTEKAYSEFRHNS-HLKTIRWKFLE 413
           D D+   + I +A  ++   +++L N+D + L    T +     +  + +     WK  +
Sbjct: 101 DRDFSIAEIIQNALKLHSGVNKALANHDLQQLEELCTLRTAQILKQQALNQPKCIWKLEK 160

Query: 412 SLEPPRVVH-ARCTDVISKENIFGQVTVRFHTRQQL 308
            +  P++++ +R    +  E  F Q  VR HT Q L
Sbjct: 161 HISKPKLLNLSRAQADLKGEEFFVQAVVRLHTLQSL 196


>SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit
            Sfc3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1339

 Score = 29.5 bits (63), Expect = 0.56
 Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
 Frame = -3

Query: 646  ELLEKKS--KSMMAIRKIKSFDEDYDSKKFISHAQDIYIKAHESLVNNDKRALRLYVTEK 473
            +L + KS  KS++AI    ++D  +  ++ + + +DI I AH+ L+  DKR +    +E 
Sbjct: 1073 QLFDAKSTIKSIVAIPDA-TYDARFSQERLMQYPEDILIAAHQELL--DKRIITRVNSEN 1129

Query: 472  AYSEFRHNSHLKTIRWKFLESLEPP 398
            +  +   N        KF  SL+ P
Sbjct: 1130 SRLQPGRNFQFTE---KFASSLKSP 1151


>SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar
           membrane transporter Hmt1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 830

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 11/40 (27%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
 Frame = -3

Query: 631 KSKSMMAIRKIKSFD-EDYDSKKFISHAQDIYIKAHESLV 515
           ++ ++M    +K+FD +D++++++  HA DIY+K    ++
Sbjct: 447 QNDAIMNFETVKNFDADDFENERY-GHAVDIYLKQERKVL 485


>SPCC4G3.08 |psk1||serine/threonine protein kinase
           Psk1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 436

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 31/116 (26%), Positives = 47/116 (40%), Gaps = 1/116 (0%)
 Frame = -3

Query: 559 SHAQDIYIKAHESLVNNDKRALRLYVTEKAYSEFRHNSHLKTIRWKFLES-LEPPRVVHA 383
           S A+DI  K    L  N K+ L     EK Y   + +   + I W  LE  + PP +V  
Sbjct: 314 SDARDIINKF---LKKNPKQRLGADGPEKGYDAIKKHRIYRRIDWNKLEKRMLPPPIVPC 370

Query: 382 RCTDVISKENIFGQVTVRFHTRQQLAVYDRFGRLIHGSEILAKDVLEYIVFEKHLS 215
             T+  + EN   + T +        +++ FG L  GS   A     Y+     L+
Sbjct: 371 -ITNPEAAENFSVEFT-KLPLSTTPILHEEFGNLTIGSHSSAFQGFTYVASPNFLN 424


>SPBC25B2.09c |||arginine-tRNA ligase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 618

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = -3

Query: 631 KSKSMMAIRKIKSFDEDYDSKKFISHAQDIYIKAHESLVNNDKR 500
           K   ++AI   K  DED      I H  D+Y+K +      D++
Sbjct: 192 KQFGLLAIGYKKYGDEDQLKSNPIRHLYDVYVKVNADATEEDEK 235


>SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1036

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = -3

Query: 526 ESLVNNDKRALRLYVTEKAYSEFRHNSHLKTIRWKFLESLE 404
           E +   ++RALRL    K     R   +LKT R ++L +LE
Sbjct: 350 EKINGLEQRALRLLAETKQIDMNRMKDYLKTRRDQYLTNLE 390


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 12/40 (30%), Positives = 18/40 (45%)
 Frame = -3

Query: 562  ISHAQDIYIKAHESLVNNDKRALRLYVTEKAYSEFRHNSH 443
            + H         ES+  N +RA  L + E   S+FRH  +
Sbjct: 1079 VKHVLKFMFSFLESIFENPERAFILPIFEVLLSDFRHKCY 1118


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,673,100
Number of Sequences: 5004
Number of extensions: 52488
Number of successful extensions: 159
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)