Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP05_T7_D07
         (940 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_1174 - 26696869-26698191                                         29   4.0  
10_03_0023 - 7151465-7152111,7152222-7152405                           29   4.0  
08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,336...    29   5.3  
03_01_0515 - 3864796-3865425                                           29   5.3  
11_06_0610 - 25449085-25453284                                         29   7.1  
07_03_1433 + 26513728-26514135,26525534-26526280                       29   7.1  

>12_02_1174 - 26696869-26698191
          Length = 440

 Score = 29.5 bits (63), Expect = 4.0
 Identities = 14/37 (37%), Positives = 14/37 (37%)
 Frame = +1

Query: 400 PPSXXPPXPVSXXXSRAXXXPEPXXXSXPPXSCSXDP 510
           PPS  PP P       A   PEP     PP S    P
Sbjct: 269 PPSPLPPPPEDYWSPTAVTPPEPTKPKPPPPSPPPPP 305


>10_03_0023 - 7151465-7152111,7152222-7152405
          Length = 276

 Score = 29.5 bits (63), Expect = 4.0
 Identities = 17/43 (39%), Positives = 18/43 (41%)
 Frame = +2

Query: 383 PXXXSXXPPXXPLXLXXXPXPGPXXFXNPXPXPXLXPPVLXIP 511
           P   S  PP  PL L   P P       P P P L PPV  +P
Sbjct: 220 PPPSSLIPPVLPLPLLNPPPP-------PPPPPSLLPPVPLLP 255


>08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,
            33643-34147,34250-34358,34436-34548,34619-34806,
            35481-36129,36169-36691,36760-36911,37042-37141,
            37301-37416
          Length = 1530

 Score = 29.1 bits (62), Expect = 5.3
 Identities = 14/39 (35%), Positives = 15/39 (38%)
 Frame = +2

Query: 380  PPXXXSXXPPXXPLXLXXXPXPGPXXFXNPXPXPXLXPP 496
            PP   S  PP  P  L   P P P     P   P + PP
Sbjct: 1173 PPLSPSLPPPPPPPPLPSGPPPQPAPPPLPIQPPPIPPP 1211


>03_01_0515 - 3864796-3865425
          Length = 209

 Score = 29.1 bits (62), Expect = 5.3
 Identities = 14/39 (35%), Positives = 15/39 (38%)
 Frame = +2

Query: 380 PPXXXSXXPPXXPLXLXXXPXPGPXXFXNPXPXPXLXPP 496
           PP   S  PP     L   P P P    +P P P   PP
Sbjct: 54  PPSVTSSPPPPAAGPLMPPPPPPPSVTSSPPPPPLPPPP 92


>11_06_0610 - 25449085-25453284
          Length = 1399

 Score = 28.7 bits (61), Expect = 7.1
 Identities = 17/51 (33%), Positives = 19/51 (37%), Gaps = 3/51 (5%)
 Frame = +1

Query: 373  PAXXXXALXPP---SXXPPXPVSXXXSRAXXXPEPXXXSXPPXSCSXDPXP 516
            P     +L PP   S  PP PVS         P P   S PP +    P P
Sbjct: 1281 PPPAPVSLPPPVVKSLPPPAPVSLPPPAVKPLPPPAPVSLPPPAVKPLPPP 1331


>07_03_1433 + 26513728-26514135,26525534-26526280
          Length = 384

 Score = 28.7 bits (61), Expect = 7.1
 Identities = 16/46 (34%), Positives = 17/46 (36%)
 Frame = +1

Query: 400 PPSXXPPXPVSXXXSRAXXXPEPXXXSXPPXSCSXDPXPXTGVRCG 537
           PPS  PP P     S     P P      P   S  P P  G+R G
Sbjct: 50  PPSSTPPSPAPVSPSPPTTYPPPSTTPPNPAPTSPSP-PAPGLRVG 94


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,704,802
Number of Sequences: 37544
Number of extensions: 177377
Number of successful extensions: 606
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 436
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 557
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2694390200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)