Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP05_T7_C23
         (789 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC113562-1|AAI13563.1|  416|Homo sapiens hepatocyte cell adhesio...    36   0.22 
BC104831-1|AAI04832.1|  416|Homo sapiens hepatocyte cell adhesio...    36   0.22 
AY047587-1|AAQ93018.1|  416|Homo sapiens hypothetical protein pr...    36   0.22 
AL834419-1|CAD39081.1|  165|Homo sapiens hypothetical protein pr...    36   0.22 
AK098396-1|BAC05297.1|  416|Homo sapiens protein ( Homo sapiens ...    36   0.22 
AC006011-2|AAX82033.1| 1336|Homo sapiens unknown protein.              33   0.89 
AB044749-1|BAB32435.1| 1336|Homo sapiens WDC146 protein.               33   0.89 
BC013284-1|AAH13284.1|  276|Homo sapiens LOC642031 protein protein.    33   1.6  
AB007933-1|BAA32309.2|  586|Homo sapiens KIAA0464 protein protein.     33   1.6  
AF129756-17|AAD18086.1| 2157|Homo sapiens BAT2 protein.                32   2.7  
BC030225-1|AAH30225.1|  134|Homo sapiens SNX22 protein protein.        31   6.3  
M55172-1|AAA62824.1| 2316|Homo sapiens large aggregating cartila...    27   7.1  
X17406-1|CAA35463.1|  600|Homo sapiens cartilage specific proteo...    27   7.9  
BC110827-1|AAI10828.1|  132|Homo sapiens DENND3 protein protein.       30   8.3  
AK074102-1|BAB84928.1| 1269|Homo sapiens FLJ00173 protein protein.     30   8.3  
AF144094-1|AAF05903.1| 3530|Homo sapiens unconventional myosin-1...    30   8.3  
AF026547-1|AAC80576.1| 1321|Homo sapiens neurocan protein.             30   8.3  
AC003110-2|AAB86655.1|  990|Homo sapiens PGCN_HUMAN protein.           30   8.3  
AB210004-1|BAE06086.1| 1335|Homo sapiens CSPG3 variant protein p...    30   8.3  
AB209423-1|BAD92660.1| 1103|Homo sapiens myosin XV variant protein.    30   8.3  

>BC113562-1|AAI13563.1|  416|Homo sapiens hepatocyte cell adhesion
           molecule protein.
          Length = 416

 Score = 35.5 bits (78), Expect = 0.22
 Identities = 17/34 (50%), Positives = 19/34 (55%)
 Frame = -3

Query: 406 PTRQAGSGPAGYSGTPAAPSGRPDGLPYRDGRRF 305
           P      GP GYS +PA P GR  GLP R  RR+
Sbjct: 329 PRSATEPGPPGYSVSPAVP-GRSPGLPIRSARRY 361


>BC104831-1|AAI04832.1|  416|Homo sapiens hepatocyte cell adhesion
           molecule protein.
          Length = 416

 Score = 35.5 bits (78), Expect = 0.22
 Identities = 17/34 (50%), Positives = 19/34 (55%)
 Frame = -3

Query: 406 PTRQAGSGPAGYSGTPAAPSGRPDGLPYRDGRRF 305
           P      GP GYS +PA P GR  GLP R  RR+
Sbjct: 329 PRSATEPGPPGYSVSPAVP-GRSPGLPIRSARRY 361


>AY047587-1|AAQ93018.1|  416|Homo sapiens hypothetical protein
           protein.
          Length = 416

 Score = 35.5 bits (78), Expect = 0.22
 Identities = 17/34 (50%), Positives = 19/34 (55%)
 Frame = -3

Query: 406 PTRQAGSGPAGYSGTPAAPSGRPDGLPYRDGRRF 305
           P      GP GYS +PA P GR  GLP R  RR+
Sbjct: 329 PRSATEPGPPGYSVSPAVP-GRSPGLPIRSARRY 361


>AL834419-1|CAD39081.1|  165|Homo sapiens hypothetical protein
           protein.
          Length = 165

 Score = 35.5 bits (78), Expect = 0.22
 Identities = 17/34 (50%), Positives = 19/34 (55%)
 Frame = -3

Query: 406 PTRQAGSGPAGYSGTPAAPSGRPDGLPYRDGRRF 305
           P      GP GYS +PA P GR  GLP R  RR+
Sbjct: 78  PRSATEPGPPGYSVSPAVP-GRSPGLPIRSARRY 110


>AK098396-1|BAC05297.1|  416|Homo sapiens protein ( Homo sapiens
           cDNA FLJ25530 fis, clone CBR07652. ).
          Length = 416

 Score = 35.5 bits (78), Expect = 0.22
 Identities = 17/34 (50%), Positives = 19/34 (55%)
 Frame = -3

Query: 406 PTRQAGSGPAGYSGTPAAPSGRPDGLPYRDGRRF 305
           P      GP GYS +PA P GR  GLP R  RR+
Sbjct: 329 PRSATEPGPPGYSVSPAVP-GRSPGLPIRSARRY 361


>AC006011-2|AAX82033.1| 1336|Homo sapiens unknown protein.
          Length = 1336

 Score = 33.5 bits (73), Expect = 0.89
 Identities = 14/27 (51%), Positives = 15/27 (55%)
 Frame = -3

Query: 406 PTRQAGSGPAGYSGTPAAPSGRPDGLP 326
           P  Q G GP G+ G P  P G P GLP
Sbjct: 641 PLHQGGGGPQGFMG-PQGPQGPPQGLP 666


>AB044749-1|BAB32435.1| 1336|Homo sapiens WDC146 protein.
          Length = 1336

 Score = 33.5 bits (73), Expect = 0.89
 Identities = 14/27 (51%), Positives = 15/27 (55%)
 Frame = -3

Query: 406 PTRQAGSGPAGYSGTPAAPSGRPDGLP 326
           P  Q G GP G+ G P  P G P GLP
Sbjct: 641 PLHQGGGGPQGFMG-PQGPQGPPQGLP 666


>BC013284-1|AAH13284.1|  276|Homo sapiens LOC642031 protein protein.
          Length = 276

 Score = 32.7 bits (71), Expect = 1.6
 Identities = 24/72 (33%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
 Frame = +2

Query: 269 QPTEPSRRIEGSETSAVSVRQPVGPPRRCRWCPGIPRWTRTSLPGRDAIHRRPV--ALIT 442
           QP  P R + G E     +R  +GP + C+  P +P   R SL G+     RP+   L  
Sbjct: 166 QPCPPKRPLMGPEQPCQPLRPLMGPNKPCKPQPLLPIPDRPSLLGQPGPPCRPLLGLLCQ 225

Query: 443 PRQRARVLVAHR 478
           PR+    LV  R
Sbjct: 226 PRRSLLDLVPAR 237


>AB007933-1|BAA32309.2|  586|Homo sapiens KIAA0464 protein protein.
          Length = 586

 Score = 32.7 bits (71), Expect = 1.6
 Identities = 21/43 (48%), Positives = 22/43 (51%)
 Frame = +3

Query: 471 RTARPHPLRSPLNLHRGGDRHLQGPGRTGVFPPPAPDSTATDR 599
           R+ RPH L SPL L   G RH  G GR     PPA  S A  R
Sbjct: 10  RSRRPHQL-SPLPL---GPRHRSGSGRRAARAPPAQRSQAPPR 48


>AF129756-17|AAD18086.1| 2157|Homo sapiens BAT2 protein.
          Length = 2157

 Score = 31.9 bits (69), Expect = 2.7
 Identities = 16/39 (41%), Positives = 18/39 (46%)
 Frame = +2

Query: 308  TSAVSVRQPVGPPRRCRWCPGIPRWTRTSLPGRDAIHRR 424
            T  V + Q   PP   RW P    W RT LP R+   RR
Sbjct: 2103 TQRVDLYQQASPPDALRWIP--KPWERTGLPPREGPSRR 2139


>BC030225-1|AAH30225.1|  134|Homo sapiens SNX22 protein protein.
          Length = 134

 Score = 30.7 bits (66), Expect = 6.3
 Identities = 17/37 (45%), Positives = 21/37 (56%)
 Frame = +2

Query: 287 RRIEGSETSAVSVRQPVGPPRRCRWCPGIPRWTRTSL 397
           R +EG + S   VRQPV P  R R  PG PR  + +L
Sbjct: 96  RALEGPQGSEGQVRQPVLPGVRERRVPGQPRRRKAAL 132


>M55172-1|AAA62824.1| 2316|Homo sapiens large aggregating cartilage
            proteoglycan core protein protein.
          Length = 2316

 Score = 26.6 bits (56), Expect(2) = 7.1
 Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = -3

Query: 421  TVYRVPTRQ-AGSGPAGYSGTPAAPSGRPD 335
            +V + PT Q AG GP+G      A SG PD
Sbjct: 1829 SVTQAPTAQEAGEGPSGILELSGAHSGAPD 1858



 Score = 22.2 bits (45), Expect(2) = 7.1
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = -3

Query: 352  PSGRPDGLPYRDG 314
            PSG P G PY  G
Sbjct: 1879 PSGEPPGTPYFSG 1891


>X17406-1|CAA35463.1|  600|Homo sapiens cartilage specific
           proteoglycan (600 AA) protein.
          Length = 600

 Score = 26.6 bits (56), Expect(2) = 7.9
 Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = -3

Query: 421 TVYRVPTRQ-AGSGPAGYSGTPAAPSGRPD 335
           +V + PT Q AG GP+G      A SG PD
Sbjct: 52  SVTQAPTAQEAGEGPSGILELSGAHSGAPD 81



 Score = 22.2 bits (45), Expect(2) = 7.9
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = -3

Query: 352 PSGRPDGLPYRDG 314
           PSG P G PY  G
Sbjct: 102 PSGEPPGTPYFSG 114


>BC110827-1|AAI10828.1|  132|Homo sapiens DENND3 protein protein.
          Length = 132

 Score = 30.3 bits (65), Expect = 8.3
 Identities = 13/23 (56%), Positives = 14/23 (60%), Gaps = 2/23 (8%)
 Frame = +2

Query: 344 PRRCRWCPGIPRWT--RTSLPGR 406
           P RC W PG P  T  RT+ PGR
Sbjct: 106 PSRCAWSPGFPITTPSRTAFPGR 128


>AK074102-1|BAB84928.1| 1269|Homo sapiens FLJ00173 protein protein.
          Length = 1269

 Score = 30.3 bits (65), Expect = 8.3
 Identities = 17/35 (48%), Positives = 19/35 (54%)
 Frame = +3

Query: 471  RTARPHPLRSPLNLHRGGDRHLQGPGRTGVFPPPA 575
            R ARP P  + L   RG   HLQ PGR G+   PA
Sbjct: 1139 RPARPAPAGAALRPRRGAGPHLQPPGR-GLPAAPA 1172


>AF144094-1|AAF05903.1| 3530|Homo sapiens unconventional myosin-15
            protein.
          Length = 3530

 Score = 30.3 bits (65), Expect = 8.3
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +3

Query: 489  PLRSPLNLHRGGDRHLQGPGRTGVFPPPAPDSTATDRCG 605
            P+R+P  L +GG+R    PGR  V  P     ++  R G
Sbjct: 1093 PIRAPEPLPKGGERRQAAPGRFAVVMPRVQKLSSFQRVG 1131


>AF026547-1|AAC80576.1| 1321|Homo sapiens neurocan protein.
          Length = 1321

 Score = 30.3 bits (65), Expect = 8.3
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = -3

Query: 466 QHSSALPWSD*SDRSTVYRVPTRQAGSGPAGYSGTPAAPSG 344
           +HSS+ PW   +    V  VPT  A + P G  G P + SG
Sbjct: 720 EHSSSSPWPSVNRNVAVGFVPTETA-TEPTGLRGIPGSESG 759


>AC003110-2|AAB86655.1|  990|Homo sapiens PGCN_HUMAN protein.
          Length = 990

 Score = 30.3 bits (65), Expect = 8.3
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = -3

Query: 466 QHSSALPWSD*SDRSTVYRVPTRQAGSGPAGYSGTPAAPSG 344
           +HSS+ PW   +    V  VPT  A + P G  G P + SG
Sbjct: 720 EHSSSSPWPSVNRNVAVGFVPTETA-TEPTGLRGIPGSESG 759


>AB210004-1|BAE06086.1| 1335|Homo sapiens CSPG3 variant protein
           protein.
          Length = 1335

 Score = 30.3 bits (65), Expect = 8.3
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = -3

Query: 466 QHSSALPWSD*SDRSTVYRVPTRQAGSGPAGYSGTPAAPSG 344
           +HSS+ PW   +    V  VPT  A + P G  G P + SG
Sbjct: 734 EHSSSSPWPSVNRNVAVGFVPTETA-TEPTGLRGIPGSESG 773


>AB209423-1|BAD92660.1| 1103|Homo sapiens myosin XV variant protein.
          Length = 1103

 Score = 30.3 bits (65), Expect = 8.3
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +3

Query: 489  PLRSPLNLHRGGDRHLQGPGRTGVFPPPAPDSTATDRCG 605
            P+R+P  L +GG+R    PGR  V  P     ++  R G
Sbjct: 970  PIRAPEPLPKGGERRQAAPGRFAVVMPRVQKLSSFQRVG 1008


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.315    0.133    0.405 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,300,808
Number of Sequences: 237096
Number of extensions: 2573273
Number of successful extensions: 9702
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 7873
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9636
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9646050614
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)