Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP05_T7_C22
         (780 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC458.07 |tfa1|SPAPYUG7.01|transcription factor TFIIE alpha su...    29   0.99 
SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalyt...    27   2.3  
SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|...    26   5.3  

>SPAC458.07 |tfa1|SPAPYUG7.01|transcription factor TFIIE alpha
           subunit Tfa1 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 448

 Score = 28.7 bits (61), Expect = 0.99
 Identities = 18/56 (32%), Positives = 28/56 (50%)
 Frame = +3

Query: 42  TESSXDQQRDAALPSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSID 209
           +E+  D++ D  L  TT    +  STDY   + +TE   +L S      K+T SI+
Sbjct: 347 SENVDDEEDDDFLDVTTATSLQNKSTDYGSVKRKTE---NLNSDSDIQNKRTKSIE 399


>SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalytic
           subunit Pka1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 512

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 21/71 (29%), Positives = 30/71 (42%)
 Frame = +3

Query: 36  AGTESSXDQQRDAALPSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSIDLR 215
           A   S   Q  D  +PS  P    +SS+  S  RH  +   +L S     +   D   LR
Sbjct: 108 ASAHSVGYQNIDNLIPSPLPESASRSSSQSSHQRHSRDGRGELGSEHGERRSAMDG--LR 165

Query: 216 DPNGLRRRVSR 248
           D +  + RVS+
Sbjct: 166 DRHIRKVRVSQ 176


>SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 397

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 23/98 (23%), Positives = 39/98 (39%), Gaps = 1/98 (1%)
 Frame = -3

Query: 355 AEASLAESGKDMLTVEPRESGGSXQCDFTSRVSHSKRETRRRSPFGSRRSMLSVFFLTRA 176
           + +++   GK+   V P  +      DF + +S S+    ++S  G  R           
Sbjct: 306 SSSTVERKGKEASEVNPNSTSSVTFSDFAAAISRSRCSRCKKSKKGCDRQ-------RPC 358

Query: 175 SRLRRSGYNSVRC-RGSE*SVDDFRSXRGVVLGRAASR 65
            R R +G NS  C    +  V + R  RG   GR  ++
Sbjct: 359 GRCRDAGLNSEDCISDDDMPVSNARKPRGRGRGRPKTK 396


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,875,724
Number of Sequences: 5004
Number of extensions: 54022
Number of successful extensions: 126
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)