Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP05_T7_C16
(846 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch... 128 1e-30
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz... 128 1e-30
SPBC685.09 |orc2|orp2|origin recognition complex subunit Orc2|Sc... 29 0.83
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 27 2.5
SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA polymerase|Sc... 27 3.3
SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr... 27 4.4
SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces pombe... 26 7.7
>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
L3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 128 bits (309), Expect = 1e-30
Identities = 68/119 (57%), Positives = 81/119 (68%), Gaps = 1/119 (0%)
Frame = -2
Query: 635 VTKGKGYK-VSLLVGTQRSYPVRHXKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEM 459
VT+GKG + + GT+R P + +GLRKVACIGAWHP+ V +TVARAG GY HRT++
Sbjct: 220 VTRGKGNEGTTARWGTKR-LPRKTHRGLRKVACIGAWHPANVQWTVARAGNAGYMHRTQL 278
Query: 458 NKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHG 282
N KIYRIG G D K NAST++D +EK ITPMGGF YG V NDFVM G G
Sbjct: 279 NSKIYRIGAG---DDAK----NASTDFDATEKRITPMGGFVRYGVVENDFVMLNGATPG 330
Score = 91.9 bits (218), Expect = 1e-19
Identities = 41/61 (67%), Positives = 49/61 (80%)
Frame = -3
Query: 295 GCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKK 116
G GP KR++TLRKSL HT R ALE ++LK+IDT+SKFGHGRFQTPA+ F+GTLKK
Sbjct: 326 GATPGPVKRVLTLRKSLLTHTSRKALEPVSLKWIDTASKFGHGRFQTPAEAKQFLGTLKK 385
Query: 115 D 113
D
Sbjct: 386 D 386
>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 128 bits (309), Expect = 1e-30
Identities = 68/119 (57%), Positives = 81/119 (68%), Gaps = 1/119 (0%)
Frame = -2
Query: 635 VTKGKGYK-VSLLVGTQRSYPVRHXKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEM 459
VT+GKG + + GT+R P + +GLRKVACIGAWHP+ V +TVARAG GY HRT++
Sbjct: 220 VTRGKGNEGTTARWGTKR-LPRKTHRGLRKVACIGAWHPANVQWTVARAGNAGYMHRTQL 278
Query: 458 NKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHG 282
N KIYRIG G D K NAST++D +EK ITPMGGF YG V NDFVM G G
Sbjct: 279 NSKIYRIGAG---DDAK----NASTDFDATEKRITPMGGFVRYGVVENDFVMLNGATPG 330
Score = 91.9 bits (218), Expect = 1e-19
Identities = 41/61 (67%), Positives = 49/61 (80%)
Frame = -3
Query: 295 GCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKK 116
G GP KR++TLRKSL HT R ALE ++LK+IDT+SKFGHGRFQTPA+ F+GTLKK
Sbjct: 326 GATPGPVKRVLTLRKSLLTHTSRKALEPVSLKWIDTASKFGHGRFQTPAEAKQFLGTLKK 385
Query: 115 D 113
D
Sbjct: 386 D 386
>SPBC685.09 |orc2|orp2|origin recognition complex subunit
Orc2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 29.1 bits (62), Expect = 0.83
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = +3
Query: 405 NFAILFVDSLSNTIDFLVHFSTVMITFLTSTSY 503
NFA+L+ SL ++ +F++H +T + T+Y
Sbjct: 377 NFALLWDTSLESSFNFVMHDATTFARYYNETTY 409
>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 230
Score = 27.5 bits (58), Expect = 2.5
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +3
Query: 372 QIILSRCIVFNNFAILFVDSLSNTIDFLVHFSTVMITFLTS 494
++ L RC++ F +LF S S + FL S + I + +S
Sbjct: 109 ELSLFRCLLLFFFFLLFFLSFSFSFSFLFFLSQIFIVYFSS 149
>SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA
polymerase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1120
Score = 27.1 bits (57), Expect = 3.3
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = -1
Query: 201 NSLTPRPSSVMVDSRRRLTRLHSWVHSRRIVFAKKLRL 88
NS+ PR + R+ L L + HS+R F KL +
Sbjct: 614 NSINPRDKVIWHTRRKELAALKTGAHSQRCDFNYKLEI 651
>SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 511
Score = 26.6 bits (56), Expect = 4.4
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -2
Query: 134 HGYTQEGSYSRRSCGYHNPS 75
HGY+ + R+ C YHNPS
Sbjct: 307 HGYSMY-ALERKMCNYHNPS 325
>SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 830
Score = 25.8 bits (54), Expect = 7.7
Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = +3
Query: 357 NGFLRQIILSRCIVFNNFAI-LFVDSLSNTIDFLVHFSTVMITF 485
N FL + SRC V N+ I + V S ++F++ M+ +
Sbjct: 366 NSFLHNMGYSRCYVDENYHITIHVSSYERRVEFMLAVCEAMMLY 409
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,092,190
Number of Sequences: 5004
Number of extensions: 63790
Number of successful extensions: 166
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 418457710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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