Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP05_T7_C02
         (954 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6 |Schizosacc...    29   1.3  
SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein ...    28   1.7  
SPAC2F3.04c |rim1||mitochondrial single-stranded DNA binding pro...    27   3.9  
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T...    26   6.8  
SPAC1250.03 |ubc14||ubiquitin conjugating enzyme Ubc14|Schizosac...    26   6.8  
SPAC458.03 |||nuclear telomere cap complex subunit |Schizosaccha...    26   9.0  

>SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 745

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 10/32 (31%), Positives = 21/32 (65%)
 Frame = -2

Query: 263 CYFSTPPFDTVLYDNIRTVLKDNKTVLLSASI 168
           CY   P + + L ++I+T+L DN  +++ A++
Sbjct: 168 CYSLDPSYKSQLEEHIKTLLSDNSPIVVPAAL 199


>SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 570

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +3

Query: 108 RNMARIYQLAVDLGGRERSLNRCREKNSFVVLKNRPDVVVQYG 236
           R +A  Y+  + LGG++ S+    EK  F  + N  DV+ + G
Sbjct: 112 RALADKYKHVLVLGGKDNSVRETAEKYGFKSVINELDVIAKLG 154


>SPAC2F3.04c |rim1||mitochondrial single-stranded DNA binding
           protein Rim1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 150

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 16/55 (29%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
 Frame = -2

Query: 260 YFSTPPFDTVLYDNIRTVLKDNKTVLLSA-SIQASLPS-SEIYRQLVDPRHVSSD 102
           + S   FD+  +D ++T+L+    V + A ++  S+P+ +E  +  +  RHVS+D
Sbjct: 66  FHSVYVFDSYNFDRLQTILRKGTRVYVEADAVWRSVPAGNEGSQAKMSLRHVSAD 120


>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 988

 Score = 26.2 bits (55), Expect = 6.8
 Identities = 19/78 (24%), Positives = 34/78 (43%)
 Frame = -2

Query: 362 KVKIADNNLATHKELALKVSSIIGTRVYVFDPSCYFSTPPFDTVLYDNIRTVLKDNKTVL 183
           K K+ D      K   +  +S   T+ +V +   YF   PF+ V+       +K + T+ 
Sbjct: 608 KKKLKDPEFVIRKYATIHATSDRATKNFVSEAFSYFDMVPFEKVVQ---LLSMKTSDTLF 664

Query: 182 LSASIQASLPSSEIYRQL 129
           +      +  SSEI++ L
Sbjct: 665 VDFVDYWTKSSSEIFKML 682


>SPAC1250.03 |ubc14||ubiquitin conjugating enzyme
           Ubc14|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 155

 Score = 26.2 bits (55), Expect = 6.8
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -2

Query: 473 KLRALLVVIPRILRSPPPTHPLIEDV 396
           KLR++L  I ++LR P P  PL+  +
Sbjct: 105 KLRSVLEQILQLLREPNPDDPLVASI 130


>SPAC458.03 |||nuclear telomere cap complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 868

 Score = 25.8 bits (54), Expect = 9.0
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -1

Query: 150 LRDLPPVGRSSPCFFRLLWSLRKILIPYSSQFW 52
           L++L  +G  SPC  RL   L  +++P    FW
Sbjct: 21  LKELQHIGVPSPCNLRLYHELISVIVP---TFW 50


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,237,002
Number of Sequences: 5004
Number of extensions: 37652
Number of successful extensions: 107
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 487313384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)