Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP05_T7_C01
         (996 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0515 - 3864796-3865425                                           32   0.62 
04_03_0904 + 20717005-20718087                                         29   5.8  
04_04_1413 - 33386049-33386339                                         29   7.6  
04_04_1149 + 31273203-31273695,31274016-31275165,31275617-31277078     29   7.6  

>03_01_0515 - 3864796-3865425
          Length = 209

 Score = 32.3 bits (70), Expect = 0.62
 Identities = 22/89 (24%), Positives = 28/89 (31%)
 Frame = +1

Query: 385 TPGXDPAPXRETTPSXVLYXRXSPXARPXXEXSXDRPXSPXGALFQXPAHAPSSXXASXX 564
           T    P+P  E +P         P   P    +   P    G L   P   PS    +  
Sbjct: 26  TAAPAPSPEAEASPPSPPTEASPPPLAPPPSVTSSPPPPAAGPLMPPPPPPPS---VTSS 82

Query: 565 THPPXAXXPSPXXXSXXPXXXXTPXMPSP 651
             PP    P P   +  P    +P  PSP
Sbjct: 83  PPPPPLPPPPPPPAASPPPPPPSPPPPSP 111


>04_03_0904 + 20717005-20718087
          Length = 360

 Score = 29.1 bits (62), Expect = 5.8
 Identities = 28/116 (24%), Positives = 36/116 (31%), Gaps = 1/116 (0%)
 Frame = +1

Query: 307 PXWTPVX-TYRFXPXXSRXIPG*XRRKTPGXDPAPXRETTPSXVLYXRXSPXARPXXEXS 483
           P  TP   TY   P   +  P    +  P   PAP   T P+   Y    P  +P    +
Sbjct: 103 PAHTPTPPTYTPTPTPPKPTPP-TYKPQPKPTPAPYTPT-PTPPTY---KPQPKPTPPPT 157

Query: 484 XDRPXSPXGALFQXPAHAPSSXXASXXTHPPXAXXPSPXXXSXXPXXXXTPXMPSP 651
                 P    +      PS       T  P    P+P      P    TP  P+P
Sbjct: 158 YKPQPKPTPTPYTPTPTPPSYKPQPKPTPTPYTPTPTPPSYKPQPKPTPTPYTPTP 213



 Score = 28.7 bits (61), Expect = 7.6
 Identities = 25/115 (21%), Positives = 31/115 (26%)
 Frame = +1

Query: 307 PXWTPVXTYRFXPXXSRXIPG*XRRKTPGXDPAPXRETTPSXVLYXRXSPXARPXXEXSX 486
           P +TP       P   +  P       P   P P    TP         P  +P      
Sbjct: 83  PTYTPTPKPTPPPYTPKPTPPAHTPTPPTYTPTP----TPPKPTPPTYKPQPKPTPAPYT 138

Query: 487 DRPXSPXGALFQXPAHAPSSXXASXXTHPPXAXXPSPXXXSXXPXXXXTPXMPSP 651
             P  P       P   P+       T  P    P+P      P    TP  P+P
Sbjct: 139 PTPTPPTYKPQPKPTPPPTYKPQPKPTPTPYTPTPTPPSYKPQPKPTPTPYTPTP 193


>04_04_1413 - 33386049-33386339
          Length = 96

 Score = 28.7 bits (61), Expect = 7.6
 Identities = 15/41 (36%), Positives = 15/41 (36%)
 Frame = -1

Query: 651 GRRHXRGXXGXGXXXXXXRGGXXGXXRVGGXGSXXGGXGVC 529
           GRR   G  G G       GG  G    GG G   G  G C
Sbjct: 56  GRRRRTGGGGGGGGGGGGCGGGGGGGGGGGCGGGGGSGGGC 96


>04_04_1149 + 31273203-31273695,31274016-31275165,31275617-31277078
          Length = 1034

 Score = 28.7 bits (61), Expect = 7.6
 Identities = 17/44 (38%), Positives = 17/44 (38%)
 Frame = -1

Query: 633 GXXGXGXXXXXXRGGXXGXXRVGGXGSXXGGXGVCRGLEQCPXG 502
           G  G G      RGG  G  R GG G   GG    RG    P G
Sbjct: 8   GGRGRGRGRGGGRGGGGGDGRGGGYGGAGGGGVGGRGGRGPPGG 51


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,633,868
Number of Sequences: 37544
Number of extensions: 212779
Number of successful extensions: 531
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 432
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 506
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2916970260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)