Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP05_T7_B24
(779 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_1072 + 25834719-25834908,25837822-25838099,25839265-25839798 33 0.19
08_01_0125 + 1001397-1001865,1002743-1002810,1003359-1003490,100... 31 1.0
01_01_0250 + 2052599-2053358,2053581-2053604,2054813-2054848,205... 31 1.0
04_04_1263 - 32207636-32207938,32208020-32208170,32208263-322085... 31 1.4
01_01_0239 + 1983267-1984008,1984148-1984180,1984280-1985394 30 1.8
11_01_0432 + 3313060-3313107,3313610-3313753,3314510-3314662,331... 29 4.1
03_02_0465 - 8688454-8689899 29 5.5
01_06_0381 + 28878811-28879120,28880189-28880331,28880753-288815... 29 5.5
01_06_1202 + 35396165-35396260,35396398-35396549,35396694-353969... 28 7.2
01_06_0475 + 29610268-29610711 28 7.2
06_03_0913 + 25913231-25913609,25913702-25913775,25914400-259145... 28 9.6
06_01_1012 + 7926408-7927232 28 9.6
02_01_0624 - 4681834-4682298,4684250-4684398,4684479-4684557,468... 28 9.6
>12_02_1072 + 25834719-25834908,25837822-25838099,25839265-25839798
Length = 333
Score = 33.5 bits (73), Expect = 0.19
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 3/81 (3%)
Frame = -1
Query: 554 LTGHDDFRCVNFSSPRK-LACFLVCLL--AGARSHRTCSVIGTTSIKRHDTRTLSSWPPV 384
+ G D + +FSS + C ++C G + ++ S+ TT+ HDT T +S PP+
Sbjct: 142 MEGVHDQQASSFSSKEDWVLCRVICKRKSGGGATSKSRSLTTTTTTIVHDTSTPTSSPPL 201
Query: 383 TTFPILRTEWKAVDVAQNTSS 321
P++ T + + NTSS
Sbjct: 202 P--PLMDTTLAQLQASMNTSS 220
>08_01_0125 +
1001397-1001865,1002743-1002810,1003359-1003490,
1003649-1003810,1003973-1004260
Length = 372
Score = 31.1 bits (67), Expect = 1.0
Identities = 28/84 (33%), Positives = 37/84 (44%), Gaps = 1/84 (1%)
Frame = -2
Query: 307 STNGAFRYFKHRSPFSSNPSLATKGSTSKLTLRHSPLSFSPDLLSGSRFRSGGRFCEARL 128
S NG R P SS +L +G L+L S F P SG+R RSGG
Sbjct: 200 SANGVISNVTLRQPDSSGGTLTYEGRFELLSLSGS---FMPTENSGTRSRSGGMSVSLAS 256
Query: 127 LLGFVLATS-SGLSPVSSPTKVRV 59
G V+ +GL +SP ++ V
Sbjct: 257 PDGRVVGGGVAGLLVAASPVQIVV 280
>01_01_0250 +
2052599-2053358,2053581-2053604,2054813-2054848,
2055047-2056284
Length = 685
Score = 31.1 bits (67), Expect = 1.0
Identities = 21/88 (23%), Positives = 35/88 (39%), Gaps = 3/88 (3%)
Frame = +3
Query: 405 GSRVVPLYRSGTNNTTRSMTSGSSKQANKKASKFPWGRKIDTSEVV---VTCKIRRPVRS 575
G++ V + NNT + +G A P D +++ + R P
Sbjct: 160 GAKAVVRLDTSYNNTAARVVAGGCDYAAVPVVGVPGASPTDYPQLLRGGYMLEWRAPAGD 219
Query: 576 CLAMRRCSGSAGGCRFSGEVRACACLTS 659
C+A C+ S G C + + A AC+ S
Sbjct: 220 CMA---CNASGGQCGYDADTEAFACICS 244
>04_04_1263 -
32207636-32207938,32208020-32208170,32208263-32208500,
32208604-32208814,32208927-32209108,32209196-32209297,
32210002-32211187,32212103-32212499,32212551-32212582,
32212885-32213157,32213307-32213394,32213486-32213723,
32213824-32214034,32214119-32214300,32214378-32214479,
32214801-32216224,32216751-32216822,32217688-32217719,
32218186-32218263,32218425-32218512,32218608-32218845,
32219060-32219162,32219386-32219558,32219644-32219745,
32219825-32220606,32220659-32221012,32224055-32224140,
32224250-32224400,32224534-32224771,32224876-32225119,
32225190-32225368,32225577-32225675,32225835-32227083
Length = 3195
Score = 30.7 bits (66), Expect = 1.4
Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Frame = +3
Query: 558 RRPVR-SCLAMRRCSGSAGGCRFSGEVRACACLTSVRGWLPQCESTSCKK 704
+RP SC C G G C F+G V AC CL P + C++
Sbjct: 274 QRPAAGSCEVYGSC-GPFGYCDFTGAVPACRCLDGFEPVDPSISQSGCRR 322
>01_01_0239 + 1983267-1984008,1984148-1984180,1984280-1985394
Length = 629
Score = 30.3 bits (65), Expect = 1.8
Identities = 16/38 (42%), Positives = 18/38 (47%)
Frame = +3
Query: 564 PVRSCLAMRRCSGSAGGCRFSGEVRACACLTSVRGWLP 677
PV C A C+ S G CR+ A ACL S G P
Sbjct: 210 PVGDCNA---CTASGGRCRYDASTSAFACLCSDGGMRP 244
>11_01_0432 +
3313060-3313107,3313610-3313753,3314510-3314662,
3315283-3315792,3315888-3317423,3317505-3317573,
3317742-3317807,3318517-3318640,3319464-3319690
Length = 958
Score = 29.1 bits (62), Expect = 4.1
Identities = 19/57 (33%), Positives = 26/57 (45%)
Frame = -2
Query: 247 LATKGSTSKLTLRHSPLSFSPDLLSGSRFRSGGRFCEARLLLGFVLATSSGLSPVSS 77
L TKG +T+ H P+ FSP S G E+ L + S GL P+S+
Sbjct: 203 LETKGKRLSVTVTHFPMIFSPISSRTFVLPSEGTMAESCLSNHHEDSLSPGLPPIST 259
>03_02_0465 - 8688454-8689899
Length = 481
Score = 28.7 bits (61), Expect = 5.5
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Frame = -3
Query: 663 EHLSSTHKHALHRKTCIRQRNPNTAASPDTNAPDVLSY---RSRRLQMCQFFFPTE 505
EHL++ H LHR T +RQ P A + + +P + Y + R + Q+ PT+
Sbjct: 142 EHLTTFRTH-LHRITSLRQLPPGLAVAGSSLSPGLHVYDLLKGRHVASVQWSDPTD 196
>01_06_0381 +
28878811-28879120,28880189-28880331,28880753-28881532,
28882568-28883968
Length = 877
Score = 28.7 bits (61), Expect = 5.5
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = -3
Query: 684 HTEEANREHLSSTHKHALHRKTCIRQRNPNTAASPDTNAPDVLSYRSRR 538
H E +R H S HKH L R + + P D+++ D +RS +
Sbjct: 743 HRSEDSRAHTSDVHKHKLKRHS--KDLEPRHHRHRDSSSEDEHEHRSSK 789
>01_06_1202 +
35396165-35396260,35396398-35396549,35396694-35396938,
35397044-35398350
Length = 599
Score = 28.3 bits (60), Expect = 7.2
Identities = 16/69 (23%), Positives = 32/69 (46%), Gaps = 4/69 (5%)
Frame = -1
Query: 503 LACFLVCLLAGARSHRTCSVIGTTSIKR----HDTRTLSSWPPVTTFPILRTEWKAVDVA 336
L+C ++ LLAGA H ++ T +KR H+ T++ P T + + ++V
Sbjct: 13 LSCSVLALLAGAEVHHHEFIVQETPVKRLCKTHNVITVNGQLPGPTLEVREGDTVVINVV 72
Query: 335 QNTSSRILL 309
+ + +
Sbjct: 73 NHAQYNVTI 81
>01_06_0475 + 29610268-29610711
Length = 147
Score = 28.3 bits (60), Expect = 7.2
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = -2
Query: 271 SPFSSNPSLATKGSTSKLTLRHSPLSFSPD 182
SP SS+P S+++ TL HSP S SPD
Sbjct: 54 SPMSSSPP---SRSSTRATLTHSPSSASPD 80
>06_03_0913 +
25913231-25913609,25913702-25913775,25914400-25914540,
25914834-25914946,25915359-25915491,25916213-25916351,
25916428-25916527,25916906-25916963,25917122-25917199,
25917278-25917376,25917657-25917735,25917826-25917974,
25918529-25918834,25918994-25919032
Length = 628
Score = 27.9 bits (59), Expect = 9.6
Identities = 13/24 (54%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
Frame = +3
Query: 531 SEVVVTCKIRRPVRS--CLAMRRC 596
S++ +TCKI RPVRS C RC
Sbjct: 398 SQLCITCKIVRPVRSKHCSTCDRC 421
>06_01_1012 + 7926408-7927232
Length = 274
Score = 27.9 bits (59), Expect = 9.6
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = -3
Query: 687 SHTEEANREHLSSTHKHALHRKTCIRQRNPNTAASP 580
+ +++A EH H H H KT +N N AA+P
Sbjct: 111 AESDDAKSEHRRRHHHH--HHKTTSAAKNANPAAAP 144
>02_01_0624 -
4681834-4682298,4684250-4684398,4684479-4684557,
4684827-4684925,4685004-4685081,4685231-4685288,
4685814-4685913,4686000-4686008,4686105-4686138,
4686729-4686911,4687099-4687126,4687268-4687380,
4688253-4688459,4689212-4689511
Length = 633
Score = 27.9 bits (59), Expect = 9.6
Identities = 13/24 (54%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
Frame = +3
Query: 531 SEVVVTCKIRRPVRS--CLAMRRC 596
S++ +TCKI RPVRS C RC
Sbjct: 363 SQLCITCKIVRPVRSKHCSTCDRC 386
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,942,127
Number of Sequences: 37544
Number of extensions: 467448
Number of successful extensions: 1444
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1386
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1444
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2091906552
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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