Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP05_T7_B13
         (785 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58738-4|AAB00604.1|  358|Caenorhabditis elegans Hypothetical pr...    33   0.31 
AF043700-1|AAB97571.2|  328|Caenorhabditis elegans Hypothetical ...    33   0.31 
AF036692-9|AAB88330.1|  389|Caenorhabditis elegans Hypothetical ...    31   1.2  

>U58738-4|AAB00604.1|  358|Caenorhabditis elegans Hypothetical
           protein F31A9.6 protein.
          Length = 358

 Score = 32.7 bits (71), Expect = 0.31
 Identities = 15/38 (39%), Positives = 24/38 (63%)
 Frame = -2

Query: 646 LXYKTCIRPVMTYASVVFAHAARTHLKSIQVIQSRFCR 533
           L YKT IRP + Y +VV +   ++  K+I+ +Q+ F R
Sbjct: 222 LLYKTFIRPRLEYGTVVSSPTKKSDEKTIESVQNAFTR 259


>AF043700-1|AAB97571.2|  328|Caenorhabditis elegans Hypothetical
           protein K09H9.4 protein.
          Length = 328

 Score = 32.7 bits (71), Expect = 0.31
 Identities = 15/38 (39%), Positives = 24/38 (63%)
 Frame = -2

Query: 646 LXYKTCIRPVMTYASVVFAHAARTHLKSIQVIQSRFCR 533
           L YKT IRP + Y +VV +   ++  K+I+ +Q+ F R
Sbjct: 192 LLYKTFIRPRLEYGTVVSSPTKKSDEKAIESVQNAFTR 229


>AF036692-9|AAB88330.1|  389|Caenorhabditis elegans Hypothetical
           protein C44B12.7 protein.
          Length = 389

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 20/69 (28%), Positives = 34/69 (49%)
 Frame = -2

Query: 766 DRGMTFRPHIKXVXXRAAXF*XXSIXCFVVEANCPSAIX*LXYKTCIRPVMTYASVVFAH 587
           D  +TF+PHIK +   A       +  F  ++ CP     L +KT I P++ Y S V++ 
Sbjct: 203 DSKLTFKPHIKKIVSLALLRCKQLLKSF--KSLCPEFYCNL-FKTYILPLIEYGSAVYSP 259

Query: 586 AARTHLKSI 560
              + L ++
Sbjct: 260 KPSSSLSTL 268


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,416,160
Number of Sequences: 27780
Number of extensions: 305846
Number of successful extensions: 792
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 744
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 792
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1903721438
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)