Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP05_T7_B12
         (794 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    30   0.44 
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    29   0.77 
SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase Pik3|Schizo...    29   1.0  
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|...    28   1.3  
SPBC18E5.01 ||SPBC29A3.19|cycloisomerase 2 family|Schizosaccharo...    27   3.1  
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb...    27   4.1  
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo...    27   4.1  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    26   5.4  
SPBC119.04 |mei3||meiosis inducing protein Mei3 |Schizosaccharom...    26   5.4  
SPAC14C4.13 |rad17||RFC related checkpoint protein Rad17|Schizos...    26   5.4  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    26   7.1  
SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr 2|||M...    25   9.4  

>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 29.9 bits (64), Expect = 0.44
 Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
 Frame = +3

Query: 387 PATTQTTILRVPPLLHDVTPTLRNP---TANTCQARTSTHFTGKTCIRLRNPNTAASPDT 557
           P +T +T + +PP     T T  NP   T+ +C   TS   TG +   L  P T   P T
Sbjct: 140 PTSTSSTSIPIPPTSTSSTDTNSNPLPTTSTSCTTSTSIPPTGGSS-SLSTPITPTVPPT 198

Query: 558 N 560
           +
Sbjct: 199 S 199


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 3971

 Score = 29.1 bits (62), Expect = 0.77
 Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
 Frame = +3

Query: 387  PATTQTTILRVPPLLHDVTPTLRNPTANTCQARTSTHFTGKTCIRLRNPNTAASP-DTNA 563
            P T+ T +   PP+          P  ++    TST  T  T +    P T+++  +T+ 
Sbjct: 1643 PITSSTALNTSPPITSSTVVNSSTPITSSTVVNTSTPITSSTVVNSSTPITSSTALNTST 1702

Query: 564  P 566
            P
Sbjct: 1703 P 1703


>SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase
           Pik3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 801

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +2

Query: 509 NLHPPAEPEHRRIARHERTGRL 574
           NL  PAE +HRR+ R +R G L
Sbjct: 235 NLDSPAELKHRRLVRSQRNGPL 256


>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 194

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 24/85 (28%), Positives = 33/85 (38%), Gaps = 1/85 (1%)
 Frame = +2

Query: 305 AEVSPPATCADSQDILPLCKLLTATNLTSHHANYNFTGSTSLTRCYSHTE-EPNREHLSS 481
           A  S   T  DS+ I        +T+  + H       + S  R  SH   EP R HLS 
Sbjct: 105 ANRSSTNTEKDSRSIAHSTSRSRSTSPANRHRRKEKERTRSNHRHGSHRRHEPYRTHLSR 164

Query: 482 THKHALHRKNLHPPAEPEHRRIARH 556
            H+H+    N H   +  + R   H
Sbjct: 165 HHRHS--TTNYHSKRDDRYERRREH 187



 Score = 26.6 bits (56), Expect = 4.1
 Identities = 17/64 (26%), Positives = 28/64 (43%)
 Frame = +2

Query: 371 TATNLTSHHANYNFTGSTSLTRCYSHTEEPNREHLSSTHKHALHRKNLHPPAEPEHRRIA 550
           T T   S    ++ + S S +    H  +  +E   S H+H  HR++     EP    ++
Sbjct: 110 TNTEKDSRSIAHSTSRSRSTSPANRHRRK-EKERTRSNHRHGSHRRH-----EPYRTHLS 163

Query: 551 RHER 562
           RH R
Sbjct: 164 RHHR 167


>SPBC18E5.01 ||SPBC29A3.19|cycloisomerase 2
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 342

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 20/71 (28%), Positives = 30/71 (42%)
 Frame = +2

Query: 335 DSQDILPLCKLLTATNLTSHHANYNFTGSTSLTRCYSHTEEPNREHLSSTHKHALHRKNL 514
           D      LC L   + LT   ANYN   S S++R  +  E+P+  H      H   + + 
Sbjct: 75  DGHSPTSLCVLENGSVLT---ANYN---SASISRSKAKDEKPHVWHHEGKSLHPERQTSS 128

Query: 515 HPPAEPEHRRI 547
           HP     H+ +
Sbjct: 129 HPHQVTAHKHL 139


>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1207

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +1

Query: 577 LTGHDDFRMCQFFFPTETCLLS 642
           LTGH  + MC  F P+E  ++S
Sbjct: 133 LTGHSHYVMCAAFHPSEDLIVS 154


>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7
           domain|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1811

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +2

Query: 509 NLHPPAEPEHRRIARHERTGRLILQVTTTSE 601
           +L PP +    R    E+TG L  Q T+TSE
Sbjct: 77  SLRPPEDDLDSRSIESEQTGTLSKQTTSTSE 107


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +3

Query: 288  LGGPQPRKSHLRLPVQTHKTFYHYANF 368
            +GG Q  K +L LP QT   FY    F
Sbjct: 3065 MGGNQVAKGYLNLPEQTDAKFYFDRRF 3091


>SPBC119.04 |mei3||meiosis inducing protein Mei3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 148

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -1

Query: 290 QSARTGQIASTVXEAGRRVRQTTRSRLQHE 201
           +S + G + S   +  +RVR+T   R++HE
Sbjct: 64  RSTKAGSVHSVPMKRTKRVRRTPAQRIEHE 93


>SPAC14C4.13 |rad17||RFC related checkpoint protein
           Rad17|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 606

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = +2

Query: 326 TCADSQDILPLCKLLTATNLTSHHANYNFTG 418
           +C  + +   +C LL+ ++  SH   Y++TG
Sbjct: 498 SCVTTDEAFNVCDLLSISDCLSHDFPYSYTG 528


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = +1

Query: 355  TMQTSYRNKSYQPPRKLQFYGFHLSYTMLLPH*GTQPRTLVKHAQART 498
            TM  + ++K     RKL+    HL +  L+ H   QP    +HAQ RT
Sbjct: 1356 TMLKTSQSKDSSSLRKLRATCLHLLFASLVAHKFDQP----QHAQTRT 1399


>SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 685

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +1

Query: 235 TRRPASXTVEAICPVLADWVGRNRGSLTSGYLCR 336
           TR+ +   ++A+CPVL + VG     LT   L R
Sbjct: 362 TRKLSEIVLDALCPVLPELVG-GSADLTPSNLTR 394


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,151,308
Number of Sequences: 5004
Number of extensions: 63761
Number of successful extensions: 204
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 203
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)