Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP05_T7_B11
         (798 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB006685-1|BAA23993.1|  254|Homo sapiens AIRE-3 protein.               33   1.6  
AB006684-3|BAA23992.1|  254|Homo sapiens AIRE-3 protein.               33   1.6  
L02867-1|AAA91850.1|  535|Homo sapiens paraneoplastic antigen pr...    31   6.4  

>AB006685-1|BAA23993.1|  254|Homo sapiens AIRE-3 protein.
          Length = 254

 Score = 32.7 bits (71), Expect = 1.6
 Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
 Frame = -1

Query: 726 CXSQXAWXVTDLSXXVXEXGPWAGGSSTXNXPDV-SSGDAPRHTRWRPAPCSPWC 565
           C S     V ++     E  P      T   P + S+G+ PR   W P PC+P+C
Sbjct: 140 CSSCLQATVQEVQPRAEEPRPQEPPVETPLPPGLRSAGEEPRCQGWTPRPCTPYC 194


>AB006684-3|BAA23992.1|  254|Homo sapiens AIRE-3 protein.
          Length = 254

 Score = 32.7 bits (71), Expect = 1.6
 Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
 Frame = -1

Query: 726 CXSQXAWXVTDLSXXVXEXGPWAGGSSTXNXPDV-SSGDAPRHTRWRPAPCSPWC 565
           C S     V ++     E  P      T   P + S+G+ PR   W P PC+P+C
Sbjct: 140 CSSCLQATVQEVQPRAEEPRPQEPPVETPLPPGLRSAGEEPRCQGWTPRPCTPYC 194


>L02867-1|AAA91850.1|  535|Homo sapiens paraneoplastic antigen
           protein.
          Length = 535

 Score = 30.7 bits (66), Expect = 6.4
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = -1

Query: 612 APRHTRWRPAPCSPWCSXXXSPRLPC 535
           +P   RWRP P  P C    +P L C
Sbjct: 33  SPSSRRWRPGPPQPHCPGPRAPALSC 58


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 67,565,717
Number of Sequences: 237096
Number of extensions: 946528
Number of successful extensions: 2160
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2160
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9813323168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)