Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP05_T7_B08
(803 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces pom... 155 9e-39
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p... 44 3e-05
SPBC83.05 |||mitochondrial RNA-binding protein |Schizosaccharomy... 31 0.19
SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces pombe... 28 1.4
SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-tran... 28 1.8
SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32 |Schi... 27 2.4
SPBC776.15c |||dihydrolipoamide S-succinyltransferase, e2 compon... 27 2.4
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 26 5.5
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 26 5.5
SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces p... 25 9.5
SPCC364.02c |bis1||stress response protein Bis1|Schizosaccharomy... 25 9.5
SPBC18E5.03c |sim4||kinetochore protein Sim4 |Schizosaccharomyce... 25 9.5
SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyce... 25 9.5
>SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1185
Score = 155 bits (375), Expect = 9e-39
Identities = 75/185 (40%), Positives = 117/185 (63%)
Frame = -1
Query: 572 LKESFPDINDEDVMSAAMYPQVASDFFRFRDKYGPVKHLDTKTFLVGPAVGDTIEVKIER 393
L E F +D D+ + +P V ++ +F D+YG + + TK FL P + + + V+I++
Sbjct: 999 LSEKFGVSSDCDIAAYTQFPGVFEEYRQFVDRYGDLTTVPTKFFLSRPEMNEEMHVEIDQ 1058
Query: 392 GKTLDIRTVAVSEDMTAAGEREVFFELNGQLRSVFIRDENASKEMKIHPKAVKGDKNQVG 213
GKTL ++ VA+ G+REV+FELNG+ R V + D+ A+ E P+A G+ V
Sbjct: 1059 GKTLIVKFVALGPLNPRTGQREVYFELNGENRHVTVEDKKAAIETVTRPRADPGNPGHVA 1118
Query: 212 APMPGTVLTIKVKEGDKVEKGQPIAVLSAMKMEMIVQAPKAGTVKTVSITNGQKLEGDDL 33
APM GT++ I+VKEG KV+KG IAVLSAMKME+++ AP +G +K++++ G + G DL
Sbjct: 1119 APMSGTIVEIRVKEGAKVKKGDIIAVLSAMKMEIVISAPHSGVLKSLAVVQGDSVNGGDL 1178
Query: 32 ICTIE 18
+E
Sbjct: 1179 CAVLE 1183
Score = 37.1 bits (82), Expect = 0.003
Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Frame = -3
Query: 735 PKSVVEYLXGSHSGYRMEDXPEPLRSKVLKDMPR-IEGRPGKELPSLNFDKL 583
P SV+++ G G PEPLR+ VLK + + RPGK LP+ +FD +
Sbjct: 945 PASVLDFFQGL-MGQPYGGFPEPLRTNVLKGRRQPLTDRPGKFLPAADFDAI 995
>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2280
Score = 43.6 bits (98), Expect = 3e-05
Identities = 27/99 (27%), Positives = 48/99 (48%), Gaps = 4/99 (4%)
Frame = -1
Query: 314 LNGQLRSVFIRDENASKEMKIHPKAV----KGDKNQVGAPMPGTVLTIKVKEGDKVEKGQ 147
LNG +V+ RDE + I + + D Q+ P PG ++ V+ G+ ++ G+
Sbjct: 677 LNGHSYTVYYRDEVTGTRISIDNLSCMLEQENDPTQLRTPSPGKLVRFLVETGEHIKAGE 736
Query: 146 PIAVLSAMKMEMIVQAPKAGTVKTVSITNGQKLEGDDLI 30
A + MKM M + A + G V+ + G L+ D++
Sbjct: 737 AYAEVEVMKMIMPLVATEDGVVQLIK-QPGASLDAGDIL 774
>SPBC83.05 |||mitochondrial RNA-binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 773
Score = 31.1 bits (67), Expect = 0.19
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = +1
Query: 586 FIEVQRRQFFSGTSFDSRHVFQNFRPQWFRXILHTVSRMAPXQV 717
F++V+ ++F T S HV ++FR + R ILH S P V
Sbjct: 105 FLKVRYKEFPQDTEAVSEHVRESFRKRPVRTILHPFSTPIPHMV 148
>SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 504
Score = 28.3 bits (60), Expect = 1.4
Identities = 15/44 (34%), Positives = 20/44 (45%)
Frame = +1
Query: 373 LMSRVFPRSILTSMVSPTAGPTRKVLVSRCLTGPYLSRKRKKSL 504
L + V T + P PT+K ++R T P R R KSL
Sbjct: 52 LETNVSSHQSATKFIEPEPSPTKKTKLTRRDTRPLAERARPKSL 95
>SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-trans
isomerase Cyp8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 516
Score = 27.9 bits (59), Expect = 1.8
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = -1
Query: 476 YGPVKHLDTKTFLVGPAVG 420
YGP KHLD K + G VG
Sbjct: 380 YGPAKHLDNKHTIFGRVVG 398
>SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 749
Score = 27.5 bits (58), Expect = 2.4
Identities = 14/57 (24%), Positives = 22/57 (38%)
Frame = +1
Query: 253 IFISLLAFSSLMKTDRSCPLSSKKTSRSPAAVMSSDTATVLMSRVFPRSILTSMVSP 423
+FI+ S D+ P+ K +R P VM T + + P + V P
Sbjct: 506 VFINQKFLDSFAIVDKLLPVLEKVKTREPTVVMGMVTVYISAGAIIPEETVHEQVIP 562
>SPBC776.15c |||dihydrolipoamide S-succinyltransferase, e2 component
of oxoglutarate dehydrogenase complex
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 452
Score = 27.5 bits (58), Expect = 2.4
Identities = 21/50 (42%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Frame = -1
Query: 218 VGAPMPGTVLTIKVKEGDKVEKGQPIAVL--SAMKMEMIVQAPKAGTVKT 75
V AP G + VKEGD + Q IAV+ SA E PK VKT
Sbjct: 88 VTAPDAGVLKEQLVKEGDTITIDQDIAVIDTSAAPPEGGSAGPKKDEVKT 137
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 26.2 bits (55), Expect = 5.5
Identities = 19/64 (29%), Positives = 31/64 (48%)
Frame = -3
Query: 192 SHYQSEGRRQSREGAADSRALRYENGNDRSSPQGWYRQDRLDYKRTKTRRRRFDLHYRIK 13
S+Y+ + R + +E D R + N+R S +Y DR +KR T + D H R K
Sbjct: 359 SNYRDDYRHRRKE--RDHRDDQSSFRNERFS--NYYGDDRSYHKRRNTGNKNCDDHLRDK 414
Query: 12 KKKK 1
++
Sbjct: 415 SPER 418
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 26.2 bits (55), Expect = 5.5
Identities = 16/51 (31%), Positives = 18/51 (35%)
Frame = -1
Query: 221 QVGAPMPGTVLTIKVKEGDKVEKGQPIAVLSAMKMEMIVQAPKAGTVKTVS 69
Q AP+ T TIK K P V SA + P A VS
Sbjct: 1039 QAAAPVTSTTTTIKQATTVSASKPAPSTVTSAASSPSNISKPSAPVANNVS 1089
>SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 752
Score = 25.4 bits (53), Expect = 9.5
Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 6/53 (11%)
Frame = +2
Query: 521 WPPTSRPRRLCLGKILS---VHPFSLSKFRE-GNSFPGRPSILGMSF--RTFD 661
WP + +P+R C K L +H S + GN P S+ SF R FD
Sbjct: 346 WPHSHKPQRACSQKFLDEFYLHDLPESNIHDSGNFHPIHSSVDNNSFSQRDFD 398
>SPCC364.02c |bis1||stress response protein Bis1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 384
Score = 25.4 bits (53), Expect = 9.5
Identities = 12/39 (30%), Positives = 23/39 (58%)
Frame = +3
Query: 279 VSDED*PQLPVELEEDLALAGGRHVLRHRHRPDVQGLSA 395
V+ E + P+ LEED + G ++++ ++ PD+ L A
Sbjct: 18 VNKEQTYKKPIPLEEDDYIEGLSYIIQQQYFPDLPKLKA 56
>SPBC18E5.03c |sim4||kinetochore protein Sim4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 277
Score = 25.4 bits (53), Expect = 9.5
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = -3
Query: 630 EGRPGKELPSLNFDKL 583
+ RPGK PSLNF+ +
Sbjct: 198 KNRPGKNQPSLNFENI 213
>SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1151
Score = 25.4 bits (53), Expect = 9.5
Identities = 12/43 (27%), Positives = 18/43 (41%)
Frame = -1
Query: 317 ELNGQLRSVFIRDENASKEMKIHPKAVKGDKNQVGAPMPGTVL 189
E GQ + + D N + + VK D NQ + T+L
Sbjct: 796 ESKGQSKKTLLHDSNMESLKSVISRIVKKDSNQSDDSVESTIL 838
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,856,167
Number of Sequences: 5004
Number of extensions: 55585
Number of successful extensions: 194
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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