Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP05_T7_B01
         (779 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT011339-1|AAR96131.1|  465|Drosophila melanogaster RH62603p pro...   269   3e-72
AF016835-1|AAC26144.1|  416|Drosophila melanogaster ribosomal pr...   269   3e-72
AE014297-1265|AAF54609.1|  403|Drosophila melanogaster CG4863-PE...   269   3e-72
AE014297-1264|AAN13496.1|  403|Drosophila melanogaster CG4863-PB...   269   3e-72
AE014297-1262|AAF54610.2|  416|Drosophila melanogaster CG4863-PA...   269   3e-72

>BT011339-1|AAR96131.1|  465|Drosophila melanogaster RH62603p
           protein.
          Length = 465

 Score =  269 bits (659), Expect = 3e-72
 Identities = 124/155 (80%), Positives = 132/155 (85%)
 Frame = -2

Query: 733 GTIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXTSRWHTKKLPRKTHKX 554
           G+IEDKVKWAREHLEKPI V +VF QDEMIDC+           TSRWHTKKLPRKTHK 
Sbjct: 199 GSIEDKVKWAREHLEKPIQVSNVFGQDEMIDCVGVTKGKGFKGVTSRWHTKKLPRKTHKG 258

Query: 553 LRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEY 374
           LRKVACIGAWHPSRVS TVARAGQKGYHHRTE+NKKIYRIG GIH KDGKVIKNNASTEY
Sbjct: 259 LRKVACIGAWHPSRVSTTVARAGQKGYHHRTEINKKIYRIGAGIHTKDGKVIKNNASTEY 318

Query: 373 DLSEKSITPMGGFPHYGEVNNDFVMXQGLLHGT*K 269
           DL++KSITPMGGFPHYGEVNNDFVM +G   G+ K
Sbjct: 319 DLTDKSITPMGGFPHYGEVNNDFVMIKGCCIGSKK 353



 Score =  119 bits (287), Expect = 4e-27
 Identities = 55/67 (82%), Positives = 60/67 (89%)
 Frame = -3

Query: 294 KGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLK 115
           KGCC+G KKRIITLRKSL  HTKR+ALE+I LKFIDTSSK GHGRFQTPADK AFMG LK
Sbjct: 345 KGCCIGSKKRIITLRKSLLKHTKRSALEQIKLKFIDTSSKMGHGRFQTPADKLAFMGPLK 404

Query: 114 KDRIREE 94
           KDR++EE
Sbjct: 405 KDRLKEE 411


>AF016835-1|AAC26144.1|  416|Drosophila melanogaster ribosomal
           protein L3 protein.
          Length = 416

 Score =  269 bits (659), Expect = 3e-72
 Identities = 124/155 (80%), Positives = 132/155 (85%)
 Frame = -2

Query: 733 GTIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXTSRWHTKKLPRKTHKX 554
           G+IEDKVKWAREHLEKPI V +VF QDEMIDC+           TSRWHTKKLPRKTHK 
Sbjct: 188 GSIEDKVKWAREHLEKPIQVSNVFGQDEMIDCVGVTKGKGFKGVTSRWHTKKLPRKTHKG 247

Query: 553 LRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEY 374
           LRKVACIGAWHPSRVS TVARAGQKGYHHRTE+NKKIYRIG GIH KDGKVIKNNASTEY
Sbjct: 248 LRKVACIGAWHPSRVSTTVARAGQKGYHHRTEINKKIYRIGAGIHTKDGKVIKNNASTEY 307

Query: 373 DLSEKSITPMGGFPHYGEVNNDFVMXQGLLHGT*K 269
           DL++KSITPMGGFPHYGEVNNDFVM +G   G+ K
Sbjct: 308 DLTDKSITPMGGFPHYGEVNNDFVMIKGCCIGSKK 342



 Score =  119 bits (287), Expect = 4e-27
 Identities = 55/67 (82%), Positives = 60/67 (89%)
 Frame = -3

Query: 294 KGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLK 115
           KGCC+G KKRIITLRKSL  HTKR+ALE+I LKFIDTSSK GHGRFQTPADK AFMG LK
Sbjct: 334 KGCCIGSKKRIITLRKSLLKHTKRSALEQIKLKFIDTSSKMGHGRFQTPADKLAFMGPLK 393

Query: 114 KDRIREE 94
           KDR++EE
Sbjct: 394 KDRLKEE 400


>AE014297-1265|AAF54609.1|  403|Drosophila melanogaster CG4863-PE,
           isoform E protein.
          Length = 403

 Score =  269 bits (659), Expect = 3e-72
 Identities = 124/155 (80%), Positives = 132/155 (85%)
 Frame = -2

Query: 733 GTIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXTSRWHTKKLPRKTHKX 554
           G+IEDKVKWAREHLEKPI V +VF QDEMIDC+           TSRWHTKKLPRKTHK 
Sbjct: 175 GSIEDKVKWAREHLEKPIQVSNVFGQDEMIDCVGVTKGKGFKGVTSRWHTKKLPRKTHKG 234

Query: 553 LRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEY 374
           LRKVACIGAWHPSRVS TVARAGQKGYHHRTE+NKKIYRIG GIH KDGKVIKNNASTEY
Sbjct: 235 LRKVACIGAWHPSRVSTTVARAGQKGYHHRTEINKKIYRIGAGIHTKDGKVIKNNASTEY 294

Query: 373 DLSEKSITPMGGFPHYGEVNNDFVMXQGLLHGT*K 269
           DL++KSITPMGGFPHYGEVNNDFVM +G   G+ K
Sbjct: 295 DLTDKSITPMGGFPHYGEVNNDFVMIKGCCIGSKK 329



 Score =  119 bits (287), Expect = 4e-27
 Identities = 55/67 (82%), Positives = 60/67 (89%)
 Frame = -3

Query: 294 KGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLK 115
           KGCC+G KKRIITLRKSL  HTKR+ALE+I LKFIDTSSK GHGRFQTPADK AFMG LK
Sbjct: 321 KGCCIGSKKRIITLRKSLLKHTKRSALEQIKLKFIDTSSKMGHGRFQTPADKLAFMGPLK 380

Query: 114 KDRIREE 94
           KDR++EE
Sbjct: 381 KDRLKEE 387


>AE014297-1264|AAN13496.1|  403|Drosophila melanogaster CG4863-PB,
           isoform B protein.
          Length = 403

 Score =  269 bits (659), Expect = 3e-72
 Identities = 124/155 (80%), Positives = 132/155 (85%)
 Frame = -2

Query: 733 GTIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXTSRWHTKKLPRKTHKX 554
           G+IEDKVKWAREHLEKPI V +VF QDEMIDC+           TSRWHTKKLPRKTHK 
Sbjct: 175 GSIEDKVKWAREHLEKPIQVSNVFGQDEMIDCVGVTKGKGFKGVTSRWHTKKLPRKTHKG 234

Query: 553 LRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEY 374
           LRKVACIGAWHPSRVS TVARAGQKGYHHRTE+NKKIYRIG GIH KDGKVIKNNASTEY
Sbjct: 235 LRKVACIGAWHPSRVSTTVARAGQKGYHHRTEINKKIYRIGAGIHTKDGKVIKNNASTEY 294

Query: 373 DLSEKSITPMGGFPHYGEVNNDFVMXQGLLHGT*K 269
           DL++KSITPMGGFPHYGEVNNDFVM +G   G+ K
Sbjct: 295 DLTDKSITPMGGFPHYGEVNNDFVMIKGCCIGSKK 329



 Score =  119 bits (287), Expect = 4e-27
 Identities = 55/67 (82%), Positives = 60/67 (89%)
 Frame = -3

Query: 294 KGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLK 115
           KGCC+G KKRIITLRKSL  HTKR+ALE+I LKFIDTSSK GHGRFQTPADK AFMG LK
Sbjct: 321 KGCCIGSKKRIITLRKSLLKHTKRSALEQIKLKFIDTSSKMGHGRFQTPADKLAFMGPLK 380

Query: 114 KDRIREE 94
           KDR++EE
Sbjct: 381 KDRLKEE 387


>AE014297-1262|AAF54610.2|  416|Drosophila melanogaster CG4863-PA,
           isoform A protein.
          Length = 416

 Score =  269 bits (659), Expect = 3e-72
 Identities = 124/155 (80%), Positives = 132/155 (85%)
 Frame = -2

Query: 733 GTIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXTSRWHTKKLPRKTHKX 554
           G+IEDKVKWAREHLEKPI V +VF QDEMIDC+           TSRWHTKKLPRKTHK 
Sbjct: 188 GSIEDKVKWAREHLEKPIQVSNVFGQDEMIDCVGVTKGKGFKGVTSRWHTKKLPRKTHKG 247

Query: 553 LRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEY 374
           LRKVACIGAWHPSRVS TVARAGQKGYHHRTE+NKKIYRIG GIH KDGKVIKNNASTEY
Sbjct: 248 LRKVACIGAWHPSRVSTTVARAGQKGYHHRTEINKKIYRIGAGIHTKDGKVIKNNASTEY 307

Query: 373 DLSEKSITPMGGFPHYGEVNNDFVMXQGLLHGT*K 269
           DL++KSITPMGGFPHYGEVNNDFVM +G   G+ K
Sbjct: 308 DLTDKSITPMGGFPHYGEVNNDFVMIKGCCIGSKK 342



 Score =  119 bits (287), Expect = 4e-27
 Identities = 55/67 (82%), Positives = 60/67 (89%)
 Frame = -3

Query: 294 KGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLK 115
           KGCC+G KKRIITLRKSL  HTKR+ALE+I LKFIDTSSK GHGRFQTPADK AFMG LK
Sbjct: 334 KGCCIGSKKRIITLRKSLLKHTKRSALEQIKLKFIDTSSKMGHGRFQTPADKLAFMGPLK 393

Query: 114 KDRIREE 94
           KDR++EE
Sbjct: 394 KDRLKEE 400


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,765,717
Number of Sequences: 53049
Number of extensions: 737230
Number of successful extensions: 2150
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2079
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2150
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3623012976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)