Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP05_T7_A11
         (761 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    36   5e-04
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       30   0.027
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    29   0.047
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    27   0.14 
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    22   7.1  

>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 35.5 bits (78), Expect = 5e-04
 Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
 Frame = -2

Query: 208 DKEDGGDVMDLEDDENLENNSHEDNTIQSQNEEEENK--GDNIEDEKPNDEKQNEPQAN 38
           +K++G    D   ++N +N + +++  Q+ N + +NK  G+     K ND KQN  + N
Sbjct: 453 NKQNGNRQNDNRQNDNKQNGNRQNDNKQNGNRQNDNKQNGNRQNGNKQNDNKQNGNRQN 511



 Score = 32.7 bits (71), Expect = 0.004
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = -2

Query: 172 DDENLENNSHEDNTIQSQNEEEENKGDNIEDEKPNDEKQNEPQAN 38
           D++N +N +  +    +QN  ++N G+   D + ND KQN  + N
Sbjct: 433 DNQNADNQNANNQNADNQNANKQN-GNRQNDNRQNDNKQNGNRQN 476



 Score = 26.6 bits (56), Expect = 0.25
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = -2

Query: 169 DENLENNSHEDNTIQSQNEEEENKGDNIEDEKPNDEKQNEPQAN 38
           ++N  N + ++    +QN   +N  DN    K N  +QN+ + N
Sbjct: 424 NQNAGNQNADNQNADNQNANNQN-ADNQNANKQNGNRQNDNRQN 466


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 29.9 bits (64), Expect = 0.027
 Identities = 39/121 (32%), Positives = 52/121 (42%), Gaps = 11/121 (9%)
 Frame = -2

Query: 388 NVDDGTITIDE-NDED--KAEDIKLDLEAMNAEQLREELKKCDYKSKGLRSQIISRLSEL 218
           N + GTI   E NDE+  +  D K D+E     + R   K       G R +  +R    
Sbjct: 49  NSNSGTINESEFNDENYWQCNDKKTDIEETGRGKGRGHGKG------GSRGRGGNRGRTG 102

Query: 217 SKTDKEDGGDVMDLEDDE--NLEN-NSHEDNTI--QSQNEEEE---NKGDNIEDEKPNDE 62
                +DG D  D ED++  N +N N     T   +  N+EEE    K   I  E PNDE
Sbjct: 103 FNNKNKDGDDNNDYEDNDYGNQDNRNDRRKKTFAAREDNDEEEAQKPKEQYIPPELPNDE 162

Query: 61  K 59
           K
Sbjct: 163 K 163



 Score = 25.8 bits (54), Expect = 0.44
 Identities = 9/34 (26%), Positives = 18/34 (52%)
 Frame = -2

Query: 157 ENNSHEDNTIQSQNEEEENKGDNIEDEKPNDEKQ 56
           +NN +EDN   +Q+   + +       + NDE++
Sbjct: 112 DNNDYEDNDYGNQDNRNDRRKKTFAAREDNDEEE 145


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 29.1 bits (62), Expect = 0.047
 Identities = 16/53 (30%), Positives = 27/53 (50%)
 Frame = -2

Query: 196 GGDVMDLEDDENLENNSHEDNTIQSQNEEEENKGDNIEDEKPNDEKQNEPQAN 38
           G +V +L  + +  NN+  DN IQ+ N + +N   N   +  N++K N    N
Sbjct: 402 GANVKELIRNTHCVNNNQNDN-IQNTNNQNDNNQKN-NKKNANNQKNNNQNDN 452


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 27.5 bits (58), Expect = 0.14
 Identities = 14/57 (24%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
 Frame = -2

Query: 196 GGDVMDLEDDENLENNSHEDNTIQSQNEEE---ENKGDNIEDEKPNDEKQNEPQANS 35
           G +V DL  +    N  ++DN   + N  +    +K DN  + + ND+  +  ++N+
Sbjct: 402 GANVNDLIRNSRCANFDNQDNNHYNHNHNQARHSSKSDNQNNNQHNDQAHHSSKSNN 458


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 19/71 (26%), Positives = 28/71 (39%), Gaps = 2/71 (2%)
 Frame = -2

Query: 262 SKGLRSQIISRLSELSKTDKEDGGDVMDLEDDENLE--NNSHEDNTIQSQNEEEENKGDN 89
           SK   S I+ R S  S               D N E   N+H  N    +  + E + DN
Sbjct: 25  SKRFSSSIVDRRSPSSSRSPSPSLLTSQPHQDHNKEKSKNNHHCNQDTEKLNQLEIESDN 84

Query: 88  IEDEKPNDEKQ 56
              ++ ND+K+
Sbjct: 85  --SKEVNDKKE 93



 Score = 21.8 bits (44), Expect = 7.1
 Identities = 12/67 (17%), Positives = 32/67 (47%)
 Frame = -2

Query: 274 CDYKSKGLRSQIISRLSELSKTDKEDGGDVMDLEDDENLENNSHEDNTIQSQNEEEENKG 95
           C+  ++ L    I   +     DK++   ++D   ++  E  + E + +  + EE++ + 
Sbjct: 68  CNQDTEKLNQLEIESDNSKEVNDKKEENFIVDRLRNDLFECENKEKSNVCLKFEEQKRRK 127

Query: 94  DNIEDEK 74
            +++D K
Sbjct: 128 KSLDDVK 134


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,492
Number of Sequences: 438
Number of extensions: 3105
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23789892
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)