Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP05_FL5_P12
(839 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ... 179 5e-46
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0... 161 8e-41
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S... 40 3e-04
SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyce... 29 1.1
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc... 26 7.6
>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
S0B|Schizosaccharomyces pombe|chr 1|||Manual
Length = 287
Score = 179 bits (435), Expect = 5e-46
Identities = 101/220 (45%), Positives = 139/220 (63%), Gaps = 9/220 (4%)
Frame = +1
Query: 97 VLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVV 276
VL ++D+ +LAA +H+G++N+ +ME YV+KRR+DG H+INL +TWEKLVLAAR +
Sbjct: 10 VLNATDDDIKNLLAADSHIGSKNLEVRMENYVWKRRSDGIHIINLGKTWEKLVLAARVIA 69
Query: 277 AIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRSLDCIG 456
IENPADV VISSRP+G RAVLKFAAHTGAT IAGRFTPG FTN I +REPR +
Sbjct: 70 TIENPADVCVISSRPYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLIIVTD 129
Query: 457 P-CTRPSTHY*SFI---CQHSCDC-FVQHRLPTKICGHCYPMQHQGLPTLLV*CGGCWHV 621
P + SF+ CD + + + I P+ ++G ++ G W++
Sbjct: 130 PRADAQAIKEASFVNIPVIALCDTDSILNHVDVAI-----PINNKGYKSI----GLAWYL 180
Query: 622 KC*GFVVCFPGD----QRWDVVVDLFFYRDPEESEKDEQQ 729
V+ G+ W+V+ DL+FYRDPEE E++E+Q
Sbjct: 181 LA-REVLRLRGNISRTTAWEVMPDLYFYRDPEEIEREEEQ 219
Score = 66.9 bits (156), Expect = 3e-12
Identities = 32/48 (66%), Positives = 36/48 (75%)
Frame = +2
Query: 434 PGLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTK 577
P L+IV DP D Q I EAS+VNIPVIALC+TDS L VD+AIP N K
Sbjct: 122 PRLIIVTDPRADAQAIKEASFVNIPVIALCDTDSILNHVDVAIPINNK 169
Score = 37.5 bits (83), Expect = 0.002
Identities = 17/22 (77%), Positives = 19/22 (86%)
Frame = +3
Query: 588 SIGLMWWLLAREVLRLRGVLPR 653
SIGL W+LLAREVLRLRG + R
Sbjct: 173 SIGLAWYLLAREVLRLRGNISR 194
>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 292
Score = 161 bits (392), Expect = 8e-41
Identities = 72/125 (57%), Positives = 95/125 (76%)
Frame = +1
Query: 85 GGLDVLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAA 264
G ++L +ED+ ++LAA H+G++N+ +M+ YV+KRR+DG H++NL +TWEKLVLAA
Sbjct: 5 GRPNILNATDEDIKQLLAANCHIGSKNLEVRMDNYVWKRRSDGVHILNLGKTWEKLVLAA 64
Query: 265 RAVVAIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRSL 444
R + IENPADV V+S+R +G RAVLKFAAHTGAT IAGRFTPG FTN I +REPR +
Sbjct: 65 RVIATIENPADVCVVSTRTYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLI 124
Query: 445 DCIGP 459
P
Sbjct: 125 VVTDP 129
Score = 68.9 bits (161), Expect = 8e-13
Identities = 42/81 (51%), Positives = 49/81 (60%), Gaps = 8/81 (9%)
Frame = +2
Query: 434 PGLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNT---KVFPLYWF-- 598
P L++V DP D Q I EAS+VNIPVIALC+TDS L VDIAIP N K L W+
Sbjct: 121 PRLIVVTDPRADAQAIKEASFVNIPVIALCDTDSILNHVDIAIPTNNKGRKSIGLIWYLL 180
Query: 599 --DVV-VVGT*SAEASWCASP 652
+V+ V GT S A W P
Sbjct: 181 AREVLRVRGTLSRSAPWDVMP 201
Score = 39.5 bits (88), Expect = 6e-04
Identities = 14/21 (66%), Positives = 19/21 (90%)
Frame = +1
Query: 664 WDVVVDLFFYRDPEESEKDEQ 726
WDV+ DL+FYRDPEE E++E+
Sbjct: 197 WDVMPDLYFYRDPEEVEREEE 217
>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
S2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 263
Score = 40.3 bits (90), Expect = 3e-04
Identities = 19/58 (32%), Positives = 31/58 (53%)
Frame = +2
Query: 398 LLLTRSKLHSVNPGLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCN 571
L+ T K V P L+++L+P ++ EA ++P I + +TD+ R V IP N
Sbjct: 168 LIQTDKKPSYVFPDLMVILNPLENKSACLEAQKTHVPTIGIIDTDADPRMVTYPIPAN 225
>SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 335
Score = 28.7 bits (61), Expect = 1.1
Identities = 14/59 (23%), Positives = 29/59 (49%)
Frame = +1
Query: 220 VINLRRTWEKLVLAARAVVAIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPG 396
V+++R TW +LV+ + + + N ++ +I++ + V+ FA H PG
Sbjct: 89 VLSVRFTWNRLVVLIKGSIYVYNLKNMELINTLNTSKGNVIAFAVHENYVAYNSPTNPG 147
>SPAC27E2.06c |||methionine-tRNA ligase,
mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
Length = 539
Score = 25.8 bits (54), Expect = 7.6
Identities = 14/58 (24%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Frame = +2
Query: 413 SKLHSVNPGLLIVLDPAQDHQPI---TEASYVNIPVIALCNTDSPLRFVDIAIPCNTK 577
++ ++ P + ++ D + T A + + LC+ +S RF D+A+ NTK
Sbjct: 49 ARFQNLKPDVSVISSTGTDEHGLKVQTVAQTEGVSPLQLCDRNSK-RFADLAVAANTK 105
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,715,090
Number of Sequences: 5004
Number of extensions: 82315
Number of successful extensions: 198
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 197
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 414453330
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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