Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP05_FL5_P11
         (987 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   5.6  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   5.6  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   5.6  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.6 bits (46), Expect = 5.6
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -1

Query: 492 APPPPPP 472
           APPPPPP
Sbjct: 342 APPPPPP 348


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 22.6 bits (46), Expect = 5.6
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = -1

Query: 489  PPPPPPXXG 463
            PPPPPP  G
Sbjct: 1357 PPPPPPSSG 1365


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.6 bits (46), Expect = 5.6
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +3

Query: 219 RGSPPXEXXNPPP 257
           RGSPP     PPP
Sbjct: 36  RGSPPNPSQGPPP 48



 Score = 21.8 bits (44), Expect = 9.8
 Identities = 10/37 (27%), Positives = 11/37 (29%)
 Frame = +3

Query: 228 PPXEXXNPPPSPKIXKXGETXPPPGXPXKXXXXPPXP 338
           PP      PP P +       P P  P      P  P
Sbjct: 410 PPSAGAPMPPIPNMSNMSGMPPLPNMPGSMPTMPTMP 446


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,328
Number of Sequences: 438
Number of extensions: 5453
Number of successful extensions: 24
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 32653530
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)