Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP05_FL5_P06
         (842 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    29   1.1  
SPCC550.07 |||acetamidase |Schizosaccharomyces pombe|chr 3|||Manual    29   1.1  
SPBC244.01c |sid4||SIN component scaffold protein Sid4 |Schizosa...    28   1.9  
SPAC2E1P3.01 |||zinc binding dehydrogenase|Schizosaccharomyces p...    27   3.3  
SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineur...    27   4.4  
SPAPB8E5.09 |||AAA family ATPase Rvb1 |Schizosaccharomyces pombe...    26   7.7  
SPBC19G7.02 |||4-amino-4-deoxychorismate lyase |Schizosaccharomy...    26   7.7  

>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
 Frame = -3

Query: 504  LVPSMH*TFPPSSAQEP--HATDPNVYRPGPAKFASQSGRP*SLPPRSASTAGCSRDCPR 331
            L PS+    PP S++ P   AT P + +P P   A  S    S PP + S    S     
Sbjct: 1046 LSPSVTPQLPPVSSRLPPVSATRPQIPQPPPVSTALPSSSAVSRPPIATSAGRSSTAAST 1105

Query: 330  ATP 322
            + P
Sbjct: 1106 SAP 1108


>SPCC550.07 |||acetamidase |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 533

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 10/15 (66%), Positives = 13/15 (86%)
 Frame = -1

Query: 809 TLCQMPWRSLAPPRT 765
           +L  MPWRS+APP+T
Sbjct: 298 SLLPMPWRSVAPPKT 312


>SPBC244.01c |sid4||SIN component scaffold protein Sid4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 660

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 14/30 (46%), Positives = 15/30 (50%)
 Frame = -3

Query: 477 PPSSAQEPHATDPNVYRPGPAKFASQSGRP 388
           PPS    P  T PN Y P P  F+  SG P
Sbjct: 211 PPSRNVPPPVTRPNQYNPEP-NFSLSSGYP 239


>SPAC2E1P3.01 |||zinc binding dehydrogenase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 348

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = +3

Query: 261 LERVSDAPGPTPEALHALGR 320
           +E +SDAP PTPE    LGR
Sbjct: 12  VEVISDAPKPTPEKGEFLGR 31


>SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineurin
           deletion Rnc1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 398

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
 Frame = -2

Query: 295 GVGPGASDTLSRIGRQ*VSISSSECP---TPPHAPSITSAAALLRHFL 161
           G G    + +SR+ +   S++S+  P   +PP APS TS  A+  +F+
Sbjct: 254 GAGTVFYNPVSRLTQPLPSLASTASPQQVSPPAAPSTTSGEAIPENFV 301


>SPAPB8E5.09 |||AAA family ATPase Rvb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 456

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
 Frame = +1

Query: 55  RLQGGETICTMIGQLV---PTKPVDKSAGQSTRVCRNCTRSVAAE 180
           R QGG+ I +M+GQL+    T+  DK  G+  +V         AE
Sbjct: 250 RPQGGQDIMSMMGQLMKPKKTEITDKLRGEINKVVNKYIEQGIAE 294


>SPBC19G7.02 |||4-amino-4-deoxychorismate lyase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 231

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 11/32 (34%), Positives = 14/32 (43%)
 Frame = +1

Query: 631 SWPGGCWLAAPLMHDSADLSAPTVRWRIRSTG 726
           SWPG  ++   L     D S   VRW +   G
Sbjct: 36  SWPGEQYIENKLREAVQDTSMARVRWELSKAG 67


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,755,825
Number of Sequences: 5004
Number of extensions: 85446
Number of successful extensions: 291
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 269
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 291
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 416455520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)