Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP05_FL5_P06
         (842 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical ...    43   3e-04
AF036706-17|AAK39277.2|  582|Caenorhabditis elegans Enhanced rna...    34   0.15 
U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical pr...    27   0.71 
AF002197-5|AAB53985.1|  341|Caenorhabditis elegans Malate dehydr...    29   4.1  
Z77654-3|CAB01129.1|  340|Caenorhabditis elegans Hypothetical pr...    29   5.5  
U23511-3|AAC46790.1|  636|Caenorhabditis elegans Small protein 6...    29   5.5  
AF104017-1|AAD12261.1|  636|Caenorhabditis elegans serine-threon...    29   5.5  
U58735-1|AAC48148.1|  891|Caenorhabditis elegans Hypothetical pr...    28   7.2  
U28738-2|AAA68309.4|  982|Caenorhabditis elegans Hypothetical pr...    28   7.2  
Z71264-3|CAA95827.1|  325|Caenorhabditis elegans Hypothetical pr...    28   9.5  
U50193-1|AAA91247.2|  532|Caenorhabditis elegans Hypothetical pr...    28   9.5  
U41277-2|AAA82473.1|  274|Caenorhabditis elegans Hypothetical pr...    28   9.5  

>AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical
           protein R11E3.3 protein.
          Length = 931

 Score = 42.7 bits (96), Expect = 3e-04
 Identities = 26/93 (27%), Positives = 44/93 (47%), Gaps = 4/93 (4%)
 Frame = +3

Query: 420 GPDGIRSGQWRAVPV---HLKAEMFNAWMARGEIPEILRQCRTVFVPKVER-PGGPGEYR 587
           GPDGI     R +P+      A ++N  ++   IP+  ++   + +PK ++ P     YR
Sbjct: 347 GPDGIAQIHIRKLPMCGYSFLAYLYNVSLSTNIIPDKWKKANVIMIPKPKKDPAIASSYR 406

Query: 588 PISITSIPLRHFHSILARRLLASCPPDARQRGF 686
           PIS+ S   +     + +R+  S    A Q GF
Sbjct: 407 PISLLSPIAKLLEKAILKRIKNSIESPAHQHGF 439


>AF036706-17|AAK39277.2|  582|Caenorhabditis elegans Enhanced rnai
           (rna interference)protein 1, isoform b protein.
          Length = 582

 Score = 33.9 bits (74), Expect = 0.15
 Identities = 17/52 (32%), Positives = 25/52 (48%)
 Frame = -3

Query: 498 PSMH*TFPPSSAQEPHATDPNVYRPGPAKFASQSGRP*SLPPRSASTAGCSR 343
           PS+H  FP SS   PHAT  +V    P        R  + PP+++  +  +R
Sbjct: 529 PSLH-EFPSSSTSSPHATSEHVTSSSPLHIDDDVDRVLNAPPKNSLASSSNR 579


>U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical
           protein C01G8.9a protein.
          Length = 1724

 Score = 27.5 bits (58), Expect(2) = 0.71
 Identities = 16/42 (38%), Positives = 18/42 (42%)
 Frame = -3

Query: 441 PNVYRPGPAKFASQSGRP*SLPPRSASTAGCSRDCPRATPHA 316
           P   RP PA FA   G P   PP +   AG     P+   HA
Sbjct: 739 PGAMRP-PAGFAPPPGAPYGYPPGAPPPAGFHPSHPQHPQHA 779



 Score = 22.6 bits (46), Expect(2) = 0.71
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = -3

Query: 477 PPSSAQEPHATDPNVYRPGP 418
           PP+S Q P    P    PGP
Sbjct: 701 PPTSVQPPQPQQPPQGPPGP 720


>AF002197-5|AAB53985.1|  341|Caenorhabditis elegans Malate
           dehydrogenase protein 1 protein.
          Length = 341

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +2

Query: 572 TGGISTDLDHVDSPETLSLHLGPE 643
           T G++ DL H+DS   ++ H GP+
Sbjct: 65  TPGVAADLSHIDSNAKVTAHTGPK 88


>Z77654-3|CAB01129.1|  340|Caenorhabditis elegans Hypothetical
           protein C50B8.3 protein.
          Length = 340

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 15/54 (27%), Positives = 26/54 (48%)
 Frame = -1

Query: 269 SLEDRSPIGLHLLERVSDTPTRAIDHLSCCSAATLLVQFLHTRVLCPALLSTGF 108
           +LED S IG+ L++R+       ID++   +  T +  F +     P   + GF
Sbjct: 287 NLEDTSSIGIVLMDRIDGDFRLEIDYIGVYNDTTHVEDFAYETYTLPVFNTHGF 340


>U23511-3|AAC46790.1|  636|Caenorhabditis elegans Small protein 6
           protein.
          Length = 636

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 13/33 (39%), Positives = 15/33 (45%)
 Frame = +2

Query: 143 ACAGTVQEVXXXXXXXGDRWRVWGCRTLARGDG 241
           AC   V+EV        +    WGC TL RG G
Sbjct: 90  ACYHAVEEVYNKAEKRMETLHKWGCATLERGSG 122


>AF104017-1|AAD12261.1|  636|Caenorhabditis elegans serine-threonine
           kinase SMA-6 protein.
          Length = 636

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 13/33 (39%), Positives = 15/33 (45%)
 Frame = +2

Query: 143 ACAGTVQEVXXXXXXXGDRWRVWGCRTLARGDG 241
           AC   V+EV        +    WGC TL RG G
Sbjct: 90  ACYHAVEEVYNKAEKRMETLHKWGCATLERGSG 122


>U58735-1|AAC48148.1|  891|Caenorhabditis elegans Hypothetical
           protein F20B4.7 protein.
          Length = 891

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = +2

Query: 767 SVAVLDFAKAFDTVSHEAL 823
           ++  +DF KAFDTV H+A+
Sbjct: 516 TLVFIDFKKAFDTVEHQAI 534


>U28738-2|AAA68309.4|  982|Caenorhabditis elegans Hypothetical protein
            T28D9.7 protein.
          Length = 982

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 22/63 (34%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
 Frame = -3

Query: 477  PPSSAQEPHATDPNVYR-PGPAKFASQSGRP*SLPPRSASTAGCSRDCPRATPHALGREE 301
            PPS   + H  D   Y  P     +  S RP     R  ST+G     PRA P A  R+E
Sbjct: 877  PPSYHDDHHPEDHYYYNDPNYLTISPPSDRPED--NREGSTSGYYSS-PRAPPQANPRDE 933

Query: 300  LPV 292
             P+
Sbjct: 934  SPI 936


>Z71264-3|CAA95827.1|  325|Caenorhabditis elegans Hypothetical
           protein K07G5.4 protein.
          Length = 325

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = -2

Query: 238 ISSSECPTPPHAPSITSAAALLRHFLYSSCTRA 140
           ISSSE   PP  PSIT   ++ R  L +S + A
Sbjct: 221 ISSSEASPPPPRPSITRTESVPRSILKNSSSFA 253


>U50193-1|AAA91247.2|  532|Caenorhabditis elegans Hypothetical
           protein ZK328.4 protein.
          Length = 532

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 19/50 (38%), Positives = 25/50 (50%)
 Frame = -1

Query: 296 RCRPRCIGHSLEDRSPIGLHLLERVSDTPTRAIDHLSCCSAATLLVQFLH 147
           +CR    G+S  + SP+     ERV DT    + H   C AAT +V  LH
Sbjct: 333 QCRNHSNGNSTVEMSPVVCTTAERVRDT----LIH-ELCHAATWVVDRLH 377


>U41277-2|AAA82473.1|  274|Caenorhabditis elegans Hypothetical
           protein C06E4.6 protein.
          Length = 274

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -1

Query: 203 AIDHLSCCSAATLLVQFLHTRVLCPALLSTGF 108
           A+D  S C+A  L+ + +   V+ P  +STGF
Sbjct: 168 ALDQYSRCAAIDLISEGIRINVVQPGFVSTGF 199


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,088,003
Number of Sequences: 27780
Number of extensions: 542926
Number of successful extensions: 1819
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1596
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1819
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2087513582
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)