Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP05_FL5_P03
         (871 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0665 - 18506221-18506271,18506331-18506401,18507097-185071...    31   0.91 
11_04_0460 - 17955102-17955146,17955253-17955310,17955442-179555...    29   3.7  
03_06_0034 + 31197846-31198417,31198562-31198987,31199074-311993...    29   4.8  
02_01_0129 - 934865-935152,935241-935490,935965-936105,937175-93...    29   6.4  
12_02_1275 - 27482784-27483272                                         28   8.5  
09_04_0361 - 16948740-16948860,16948951-16949018,16949424-169495...    28   8.5  
06_03_0685 - 23499779-23500204                                         28   8.5  

>04_03_0665 -
           18506221-18506271,18506331-18506401,18507097-18507169,
           18507476-18507805
          Length = 174

 Score = 31.5 bits (68), Expect = 0.91
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = +3

Query: 198 WKWCGLRRDQTGREG 242
           W WCGLRR + GR G
Sbjct: 65  WMWCGLRRSKAGRRG 79


>11_04_0460 -
           17955102-17955146,17955253-17955310,17955442-17955593,
           17955888-17955993,17956101-17956222,17956766-17956834,
           17956969-17957214,17957331-17957373,17957449-17957520,
           17957954-17958066,17958158-17958238,17958343-17958415,
           17959413-17959519,17960410-17960514,17960684-17960974,
           17961621-17961707,17961774-17961842,17961917-17961973,
           17962057-17962155,17962223-17962312,17962395-17962511,
           17964164-17964244,17964353-17964502,17964812-17964956,
           17967359-17967510,17967647-17967784,17967838-17967914,
           17968032-17968134
          Length = 1015

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 18/55 (32%), Positives = 27/55 (49%)
 Frame = +1

Query: 172 SSSISKYYNGNGVDSVETKQVEKVYSGDGASLSAPGSKRSALSASDAECFSLCLG 336
           SSS S+Y N +G    +T   +++ SG  +S     S    +S+ D E   L LG
Sbjct: 781 SSSSSRYSNSSGTIFQKTSVQKRLSSGSSSSSKNKRSTAVVMSSPDCELDLLLLG 835


>03_06_0034 +
           31197846-31198417,31198562-31198987,31199074-31199386,
           31199510-31199560
          Length = 453

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -3

Query: 293 AERLLPGALRDAPSPE*TFSTCLVSTESTPF 201
           ++RL+  ALR  PSP   F++ L    +TPF
Sbjct: 39  SQRLVYAALRSLPSPRALFASLLSQLSATPF 69


>02_01_0129 -
           934865-935152,935241-935490,935965-936105,937175-937707
          Length = 403

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = +2

Query: 284 NAQLC-RLRTPSVSRCAWAPGLCGGPDVP 367
           NA  C R   P V+  +WAP  CGG  VP
Sbjct: 75  NAWNCPRNSRPPVAALSWAPARCGGGAVP 103


>12_02_1275 - 27482784-27483272
          Length = 162

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +3

Query: 195 QWKWCGLRRDQTGREG 242
           +W W GLRR +TGR G
Sbjct: 144 RWVWRGLRRTKTGRRG 159


>09_04_0361 -
           16948740-16948860,16948951-16949018,16949424-16949510,
           16949626-16949694,16949786-16949854,16949944-16950765
          Length = 411

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = -3

Query: 395 PLRAVQSREQGHQDHHRGPAPRHSEKHSASEADRAERL 282
           P   + S  +GH +HHR        +  A E DR + L
Sbjct: 44  PFCMLTSSSRGHAEHHRNGGGGGEHRREAGEGDRPKAL 81


>06_03_0685 - 23499779-23500204
          Length = 141

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 16/42 (38%), Positives = 20/42 (47%)
 Frame = +2

Query: 215 PSRPNRSRRFIPVTGRL*ALPAANAQLCRLRTPSVSRCAWAP 340
           P R  R RR+ P  GR+  LP    ++CR R P   R    P
Sbjct: 42  PPRGGRIRRWPPRRGRIRGLPPLGGRICR-RPPRGGRIHGLP 82


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,047,961
Number of Sequences: 37544
Number of extensions: 249846
Number of successful extensions: 904
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 880
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 903
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2444475072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)