Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP05_FL5_P03
         (871 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    22   6.4  
DQ494417-1|ABF55368.1|   42|Apis mellifera telomerase reverse tr...    22   8.5  

>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -1

Query: 397 PPSGRCRAVSRDIRTTTEARRPGTARN 317
           PP  R       + T++E R+PG A N
Sbjct: 491 PPPYRLNKPLMSLITSSEVRQPGKAPN 517


>DQ494417-1|ABF55368.1|   42|Apis mellifera telomerase reverse
          transcriptase protein.
          Length = 42

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 6/18 (33%), Positives = 13/18 (72%)
 Frame = -1

Query: 73 QRNCVAHKVVTRMNLCSS 20
          Q+ C+ HK++ + N C++
Sbjct: 19 QQYCLHHKILIKKNKCNA 36


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,234
Number of Sequences: 438
Number of extensions: 2538
Number of successful extensions: 4
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28159464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)