Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP05_FL5_O17
         (970 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    24   2.4  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    24   2.4  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   4.2  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   5.5  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   7.3  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   9.6  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.8 bits (49), Expect = 2.4
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +2

Query: 11   GGPGKIPSXSHLVXPYXGF 67
            GGP KIP  +  + PY  F
Sbjct: 1682 GGPDKIPETAEDISPYATF 1700



 Score = 21.8 bits (44), Expect = 9.6
 Identities = 11/47 (23%), Positives = 17/47 (36%)
 Frame = +2

Query: 53   PYXGFIKNVXPTLXFILVTRFXPPLGAXNPNWGXKLXKTPKXPXXPP 193
            PY   I  + P   + +      P G   P+    +   P+ P  PP
Sbjct: 964  PYAALIDELKPATRYTIRVIAEGPAGRSVPSAELIVRTEPQRPAGPP 1010


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.8 bits (49), Expect = 2.4
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +2

Query: 11   GGPGKIPSXSHLVXPYXGF 67
            GGP KIP  +  + PY  F
Sbjct: 1678 GGPDKIPETAEDISPYATF 1696



 Score = 21.8 bits (44), Expect = 9.6
 Identities = 11/47 (23%), Positives = 17/47 (36%)
 Frame = +2

Query: 53   PYXGFIKNVXPTLXFILVTRFXPPLGAXNPNWGXKLXKTPKXPXXPP 193
            PY   I  + P   + +      P G   P+    +   P+ P  PP
Sbjct: 960  PYAALIDELKPATRYTIRVIAEGPAGRSVPSAELIVRTEPQRPAGPP 1006


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.0 bits (47), Expect = 4.2
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +2

Query: 605  KXKXPPPPPPXXGGG 649
            + + PPPPPP    G
Sbjct: 1351 RQQQPPPPPPPPSSG 1365


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.6 bits (46), Expect = 5.5
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +2

Query: 617 PPPPPPXXGG 646
           PPPPPP   G
Sbjct: 343 PPPPPPSSSG 352


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 22.2 bits (45), Expect = 7.3
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +3

Query: 618 PPPPPXXGG 644
           PPPPP  GG
Sbjct: 376 PPPPPIRGG 384



 Score = 22.2 bits (45), Expect = 7.3
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +1

Query: 619 PPPPPXXGG 645
           PPPPP  GG
Sbjct: 376 PPPPPIRGG 384


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 9.6
 Identities = 10/30 (33%), Positives = 11/30 (36%)
 Frame = +1

Query: 502  GXXGAFFFXXXGGGXXPPRGGGXXXPPPPP 591
            G  G+      G     P  G    PPPPP
Sbjct: 1835 GSRGSVGRRSVGSARNIPVSGSPEPPPPPP 1864


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.316    0.152    0.550 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 208,700
Number of Sequences: 438
Number of extensions: 6093
Number of successful extensions: 14
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 31927896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)