Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP05_FL5_M04
(833 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ... 287 1e-78
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0... 286 3e-78
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S... 44 2e-05
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc... 29 1.1
SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces pombe... 27 3.3
SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr 2... 27 3.3
SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyce... 27 4.3
SPBC530.02 |||membrane transporter|Schizosaccharomyces pombe|chr... 26 7.6
>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
S0B|Schizosaccharomyces pombe|chr 1|||Manual
Length = 287
Score = 287 bits (704), Expect = 1e-78
Identities = 134/208 (64%), Positives = 163/208 (78%)
Frame = +2
Query: 83 VLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRAWEKLVLAARAVV 262
VL ++D+ +LAA +H+G++N+ +ME YV+KRR+DG H+INL + WEKLVLAAR +
Sbjct: 10 VLNATDDDIKNLLAADSHIGSKNLEVRMENYVWKRRSDGIHIINLGKTWEKLVLAARVIA 69
Query: 263 AIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLD 442
IENPADV VISSRP+G RAVLKFAAHTGAT IAGRFTPG FTN I +REPRL+IV D
Sbjct: 70 TIENPADVCVISSRPYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLIIVTD 129
Query: 443 PAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLARKVLRLR 622
P D Q I EAS+VNIPVIALC+TDS L VD+AIP N K SIGL W+LLAR+VLRLR
Sbjct: 130 PRADAQAIKEASFVNIPVIALCDTDSILNHVDVAIPINNKGYKSIGLAWYLLAREVLRLR 189
Query: 623 GVLPRDQRWDVVVDLFFYRDPEESEKDE 706
G + R W+V+ DL+FYRDPEE E++E
Sbjct: 190 GNISRTTAWEVMPDLYFYRDPEEIEREE 217
>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 292
Score = 286 bits (701), Expect = 3e-78
Identities = 131/212 (61%), Positives = 165/212 (77%)
Frame = +2
Query: 71 GGLDVLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRAWEKLVLAA 250
G ++L +ED+ ++LAA H+G++N+ +M+ YV+KRR+DG H++NL + WEKLVLAA
Sbjct: 5 GRPNILNATDEDIKQLLAANCHIGSKNLEVRMDNYVWKRRSDGVHILNLGKTWEKLVLAA 64
Query: 251 RAVVAIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLL 430
R + IENPADV V+S+R +G RAVLKFAAHTGAT IAGRFTPG FTN I +REPRL+
Sbjct: 65 RVIATIENPADVCVVSTRTYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLI 124
Query: 431 IVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLARKV 610
+V DP D Q I EAS+VNIPVIALC+TDS L VDIAIP N K SIGL+W+LLAR+V
Sbjct: 125 VVTDPRADAQAIKEASFVNIPVIALCDTDSILNHVDIAIPTNNKGRKSIGLIWYLLAREV 184
Query: 611 LRLRGVLPRDQRWDVVVDLFFYRDPEESEKDE 706
LR+RG L R WDV+ DL+FYRDPEE E++E
Sbjct: 185 LRVRGTLSRSAPWDVMPDLYFYRDPEEVEREE 216
>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
S2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 263
Score = 44.4 bits (100), Expect = 2e-05
Identities = 46/190 (24%), Positives = 81/190 (42%), Gaps = 27/190 (14%)
Frame = +2
Query: 116 MLAATTHLGAENV--NFQMETYVYKRRADGTHVINLRRAWEKLVLAARAVVAIENPADVF 289
+L++ HLG N + ++Y +R +G H+I+L + L A V +I +
Sbjct: 53 LLSSGAHLGHSTSIWNPYTQPFIYGKR-EGIHIISLDQTMVYLRRAISVVRSIAKENGII 111
Query: 290 VISSRPFGQR-AVLKFAAHTGATPIAGRFTPGAFTN--QIQA------------------ 406
+ GQ+ +V+ A I R+ PG TN ++Q
Sbjct: 112 LFIGTRNGQKDSVVAAAKRARGYHIFDRWLPGLLTNAREVQGKLGGSILCKDNRGKLIQT 171
Query: 407 ----AFREPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHS 574
++ P L+++L+P ++ EA ++P I + +TD+ R V IP N S
Sbjct: 172 DKKPSYVFPDLMVILNPLENKSACLEAQKTHVPTIGIIDTDADPRMVTYPIPANDDSLRC 231
Query: 575 IGLMWWLLAR 604
L+ LL+R
Sbjct: 232 TDLIAGLLSR 241
>SPAC27E2.06c |||methionine-tRNA ligase,
mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
Length = 539
Score = 28.7 bits (61), Expect = 1.1
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 5/84 (5%)
Frame = +2
Query: 341 HTGATPIAGRFTPGAFTNQIQAAFR--EPRLLIVLDPAQDHQPI---TEASYVNIPVIAL 505
+ A P G T+ I A F+ +P + ++ D + T A + + L
Sbjct: 29 YVNAAPHLGHLYSLVLTDAI-ARFQNLKPDVSVISSTGTDEHGLKVQTVAQTEGVSPLQL 87
Query: 506 CNTDSPLRFVDIAIPCNTKSSHSI 577
C+ +S RF D+A+ NTK +H I
Sbjct: 88 CDRNSK-RFADLAVAANTKFTHFI 110
>SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 564
Score = 27.1 bits (57), Expect = 3.3
Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
Frame = +3
Query: 630 FPVTSAGML--WLICSSTVTLKKVKRMNNKA 716
FP S ++ WL +TVTLKK+K + ++A
Sbjct: 480 FPFQSTVLILSWLCVENTVTLKKIKMLFSEA 510
>SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 474
Score = 27.1 bits (57), Expect = 3.3
Identities = 22/69 (31%), Positives = 31/69 (44%)
Frame = -2
Query: 469 SNGLMVLCRVQYNQETRFTECSLDLVSKSTWCETSRNRRSTGVRGKLQYSTLTEGP**DD 290
S GL L R + E F + +S + W T + + G+RG ++ EGP D
Sbjct: 169 SEGLEDLIRAE--AEKYFAKADCVCISDTYWLGTKKPVLTYGLRGVCYFNITVEGP-SAD 225
Query: 289 EHISGVLDG 263
H SGV G
Sbjct: 226 LH-SGVFGG 233
>SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 335
Score = 26.6 bits (56), Expect = 4.3
Identities = 13/59 (22%), Positives = 28/59 (47%)
Frame = +2
Query: 206 VINLRRAWEKLVLAARAVVAIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPG 382
V+++R W +LV+ + + + N ++ +I++ + V+ FA H PG
Sbjct: 89 VLSVRFTWNRLVVLIKGSIYVYNLKNMELINTLNTSKGNVIAFAVHENYVAYNSPTNPG 147
>SPBC530.02 |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 541
Score = 25.8 bits (54), Expect = 7.6
Identities = 11/32 (34%), Positives = 14/32 (43%)
Frame = -1
Query: 830 SRRGGIFSP*SHWLQCFIPVFMDRSXYFWFSW 735
+RR G+ SP F M FWF+W
Sbjct: 397 TRRNGVMSPEDRLYPLFFGSIMLPISMFWFAW 428
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,708,151
Number of Sequences: 5004
Number of extensions: 82113
Number of successful extensions: 198
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 410448950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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