Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP05_FL5_M04
         (833 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    23   3.5  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    23   3.5  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    23   4.6  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   6.1  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   8.0  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    22   8.0  

>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -3

Query: 657 TTSQRWSRGSTPRSLNTLRANNHHIKP 577
           T +Q WSRG+T  SL+    +   + P
Sbjct: 18  TQAQHWSRGNTWLSLDNSNMSMSSVGP 44


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -3

Query: 657 TTSQRWSRGSTPRSLNTLRANNHHIKP 577
           T +Q WSRG+T  SL+    +   + P
Sbjct: 18  TQAQHWSRGNTWLSLDNSNMSMSSVGP 44


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 13/35 (37%), Positives = 15/35 (42%)
 Frame = -1

Query: 758 SXYFWFSWYHSLFLGFVVHPFHFLQGHGRRTNQPQ 654
           S YF  S+   L  G V HP    Q +G     PQ
Sbjct: 2   SSYFANSYIPDLRNGGVEHPHQHQQHYGAAVQVPQ 36


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -1

Query: 668 TNQPQHPSAGHGEAHHEAS 612
           T  P H + GHG +H  A+
Sbjct: 411 TPGPHHHTMGHGHSHIHAT 429


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 6/30 (20%), Positives = 16/30 (53%)
 Frame = +2

Query: 434 VLDPAQDHQPITEASYVNIPVIALCNTDSP 523
           ++DP ++++   E   + IP++   +   P
Sbjct: 167 IVDPVEENETYDEFDTIRIPIVRSLSKSPP 196


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 9/10 (90%), Positives = 10/10 (100%)
 Frame = -2

Query: 718 LALLFILFTF 689
           LALL+ILFTF
Sbjct: 51  LALLYILFTF 60


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 251,648
Number of Sequences: 438
Number of extensions: 5892
Number of successful extensions: 14
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26702940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)