Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP05_FL5_M01
         (967 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    27   0.34 
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    27   0.34 
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    25   0.78 
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    23   4.1  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    23   5.5  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   9.6  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 26.6 bits (56), Expect = 0.34
 Identities = 10/34 (29%), Positives = 16/34 (47%)
 Frame = +2

Query: 284 NWIXKRXXWEPRXNGAAXLGWCXRERLXRPDXVL 385
           +W   +  WEP+  G   +     + + RPD VL
Sbjct: 84  SWYDYKLRWEPKEYGGVKMLHVPSDHIWRPDIVL 117


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 26.6 bits (56), Expect = 0.34
 Identities = 10/34 (29%), Positives = 16/34 (47%)
 Frame = +2

Query: 284 NWIXKRXXWEPRXNGAAXLGWCXRERLXRPDXVL 385
           +W   +  WEP+  G   +     + + RPD VL
Sbjct: 84  SWYDYKLRWEPKEYGGVKMLHVPSDHIWRPDIVL 117


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 25.4 bits (53), Expect = 0.78
 Identities = 9/34 (26%), Positives = 16/34 (47%)
 Frame = +2

Query: 284 NWIXKRXXWEPRXNGAAXLGWCXRERLXRPDXVL 385
           +W   +  W+P+  G   +     + + RPD VL
Sbjct: 80  SWYDYKLKWDPKEYGGVEMLHVPSDHIWRPDIVL 113


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 23.0 bits (47), Expect = 4.1
 Identities = 17/66 (25%), Positives = 26/66 (39%), Gaps = 3/66 (4%)
 Frame = +2

Query: 197 IVVXLTLYLRHA---NIRESESTVRILAXLXXNWIXKRXXWEPRXNGAAXLGWCXRERLX 367
           +VV L L L      N+++   T  +   L   W   +  W+P   G     +   E + 
Sbjct: 46  VVVKLGLRLSQLIDLNLKDQILTTNV--WLEHEWQDHKFQWDPAEYGGVTELYVPSEHIW 103

Query: 368 RPDXVL 385
            PD VL
Sbjct: 104 LPDIVL 109


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 22.6 bits (46), Expect = 5.5
 Identities = 9/33 (27%), Positives = 13/33 (39%)
 Frame = +2

Query: 287 WIXKRXXWEPRXNGAAXLGWCXRERLXRPDXVL 385
           W   +  W P   G   + +   E +  PD VL
Sbjct: 90  WNDYKLKWNPEEYGGVEMLYVPSENIWLPDIVL 122


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.8 bits (44), Expect = 9.6
 Identities = 10/56 (17%), Positives = 23/56 (41%)
 Frame = +2

Query: 218 YLRHANIRESESTVRILAXLXXNWIXKRXXWEPRXNGAAXLGWCXRERLXRPDXVL 385
           +++  N+ E    ++    L   W   +  W+    G   +     +++ +PD VL
Sbjct: 60  FVQLINVNEKNQIMKSNVWLRFIWTDYQLQWDEADYGGIGVLRLPPDKVWKPDIVL 115


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 131,406
Number of Sequences: 438
Number of extensions: 1634
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 31806957
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)