Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP05_FL5_L23
         (876 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces...    28   1.5  
SPCC4G3.10c |rhp42|rhp4b|DNA repair protein Rhp42|Schizosaccharo...    27   3.5  
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    27   3.5  
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb...    27   4.6  
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom...    26   8.1  
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom...    26   8.1  

>SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 404

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 20/90 (22%), Positives = 41/90 (45%), Gaps = 6/90 (6%)
 Frame = +3

Query: 63  GPDSNPSPEDTVESINIITDHISSAIIRSSKEVDVEDSFHRIRL-----SPDLRNLLRVR 227
           GP SN        S +  TDH++   I   KE+D+     + +      SP+   + + R
Sbjct: 29  GPPSNFKNNSLTSSTHSSTDHVNVLPISQDKEMDISSPVKKQKASYSNKSPNKAPIQKSR 88

Query: 228 NAAIRAY-DRHSNRIQMHRLQREVRSRLSD 314
            ++++++ +  S +  + R +R+   R  D
Sbjct: 89  GSSLKSHLETESQQTPVKRRRRKATIRNVD 118


>SPCC4G3.10c |rhp42|rhp4b|DNA repair protein
           Rhp42|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 686

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 12/43 (27%), Positives = 24/43 (55%)
 Frame = +3

Query: 69  DSNPSPEDTVESINIITDHISSAIIRSSKEVDVEDSFHRIRLS 197
           D +P+ ++  + ++I+T HI+  + + SK+         IRLS
Sbjct: 110 DLSPNKQEDKKDLHIVTQHITPQLTKESKKGSSSAMDKSIRLS 152


>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
            Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
 Frame = +3

Query: 66   PDSNPSPEDTVESINIITDHISSAIIRSSKEVDVE-DSFHRIRLSPDLRNL 215
            P   P P D + +  ++  H    I+ S KE+  E D   R+ L   L+ L
Sbjct: 865  PIPEPIPVDAMPTFTVLVPHYGEKILLSLKEIIREQDKLSRVTLLEYLKQL 915


>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1334

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 14/50 (28%), Positives = 22/50 (44%)
 Frame = +3

Query: 33  PTPLRQSSXYGPDSNPSPEDTVESINIITDHISSAIIRSSKEVDVEDSFH 182
           P  L     Y  + NP  +D  + INI+   +S   + S K  +  + FH
Sbjct: 771 PLLLEAVLKYTDEGNPDKQDIPKVINIVRGFLSRLNVESGKAENKFNLFH 820


>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
            pombe|chr 1||Partial|Manual
          Length = 1887

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +2

Query: 59   LRPGFESIPRGHRRIHKHHYRSHL 130
            L+ G E +   HRR HK  Y  HL
Sbjct: 1674 LKYGLEDMSLSHRRGHKRTYDEHL 1697


>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1919

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +2

Query: 59   LRPGFESIPRGHRRIHKHHYRSHL 130
            L+ G E +   HRR HK  Y  HL
Sbjct: 1674 LKYGLEDMSLSHRRGHKRTYDEHL 1697


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,307,000
Number of Sequences: 5004
Number of extensions: 64327
Number of successful extensions: 260
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 247
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 259
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)