Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP05_FL5_L09
         (862 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein Did4...    30   0.37 
SPCC18.08 |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr 3|...    27   3.4  
SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomy...    27   4.5  
SPCC1020.10 |oca2||serine/threonine protein kinase Oca2 |Schizos...    26   7.9  
SPAC25H1.09 |mde5|meu30, SPAC4A8.01|alpha-amylase homolog Mde5|S...    26   7.9  

>SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein
           Did4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 210

 Score = 30.3 bits (65), Expect = 0.37
 Identities = 11/25 (44%), Positives = 19/25 (76%)
 Frame = +2

Query: 221 VRVHRANTGRSSNELDRQTTELERR 295
           +R H+ + GR+  ELDR+ T+L++R
Sbjct: 18  LRAHQRSLGRAERELDRERTKLDQR 42


>SPCC18.08 |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 531

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = +3

Query: 69  CAIASPAECENATSLSLMIDSLLATYDRDSPPDSKIVVN 185
           C I  P  C  A  L  + DSL+  Y+  SP   K V+N
Sbjct: 378 CEIMLPKTCTVAHLLDKLFDSLVLKYNTSSP---KFVIN 413


>SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 874

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 23/105 (21%), Positives = 45/105 (42%), Gaps = 3/105 (2%)
 Frame = +3

Query: 270 DKRLSWNAGEWGCSTWLVSSERLWRPDVVLLN---AAATTAGDYALRVRVSNNGSVSWIK 440
           +K+L+     +    WL+S +R W   + +++     A    +  L V++ +   + + K
Sbjct: 415 EKKLAKRVKNYRLKDWLISRQRFWGTPIPMVHCETCGAVPVPESELPVKLPDLDKI-YEK 473

Query: 441 RLDISTPISMQLDNWPNDMQTCTFKFGSRMHNSDEMDFVIDKRIY 575
               ++P+S  L+ W     TC    G     +D MD  +D   Y
Sbjct: 474 G---TSPLS-NLETWMK--TTCPKCHGPATRETDTMDTFVDSSWY 512


>SPCC1020.10 |oca2||serine/threonine protein kinase Oca2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 650

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +3

Query: 435 IKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHN 536
           +KR DI    +   DNW ND+  C  + G  +H+
Sbjct: 600 VKRYDIHRVFA---DNWINDISMCHMENGKVIHS 630


>SPAC25H1.09 |mde5|meu30, SPAC4A8.01|alpha-amylase homolog
           Mde5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = +3

Query: 483 WPNDMQTCTFKFGSRMHNSDEMDFVIDKRIYSMFES 590
           WP D+ T    FG+     D  D + D+ +Y M ++
Sbjct: 105 WPQDLYTLNPHFGTEQDLIDLADALHDRGMYLMVDT 140


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,080,320
Number of Sequences: 5004
Number of extensions: 60734
Number of successful extensions: 156
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)