Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP05_FL5_L06
         (743 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    34   0.025
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    30   0.40 
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    30   0.40 
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    27   3.7  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    27   3.7  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   3.7  
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    27   3.7  
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    27   3.7  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 33.9 bits (74), Expect = 0.025
 Identities = 22/72 (30%), Positives = 22/72 (30%)
 Frame = +1

Query: 451 PPPPXKKKXXXXXXXKKXXPPPPPPXXGGXXXXXXXXGXXGGXPPPXXKXXFFFFFXXXX 630
           PPPP                PPP P  GG        G  G  PPP              
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPP-------------- 777

Query: 631 PPPPPXXXXXGG 666
           PPPPP     GG
Sbjct: 778 PPPPPPAVSAGG 789



 Score = 29.9 bits (64), Expect = 0.40
 Identities = 10/15 (66%), Positives = 10/15 (66%)
 Frame = -3

Query: 681 PPPPPPPPXXXXGGG 637
           PPPPPPPP     GG
Sbjct: 775 PPPPPPPPPAVSAGG 789



 Score = 27.5 bits (58), Expect = 2.1
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = -3

Query: 681 PPPPPPPPXXXXGG 640
           PPPPPPPP     G
Sbjct: 761 PPPPPPPPGVAGAG 774



 Score = 27.1 bits (57), Expect = 2.8
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = -3

Query: 678 PPPPPPPXXXXGGG 637
           PPPPPPP    G G
Sbjct: 761 PPPPPPPPGVAGAG 774



 Score = 27.1 bits (57), Expect = 2.8
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = -3

Query: 678 PPPPPPPXXXXGGGG 634
           PPPPPPP      GG
Sbjct: 775 PPPPPPPPPAVSAGG 789



 Score = 25.8 bits (54), Expect = 6.5
 Identities = 12/40 (30%), Positives = 12/40 (30%)
 Frame = +1

Query: 418 PPPXXGXXFXXPPPPXKKKXXXXXXXKKXXPPPPPPXXGG 537
           P P        PPPP               PPPP    GG
Sbjct: 750 PVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGG 789



 Score = 24.2 bits (50), Expect(2) = 2.7
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = -3

Query: 675 PPPPPPXXXXGGGG 634
           PPPPPP     G G
Sbjct: 761 PPPPPPPPGVAGAG 774



 Score = 21.0 bits (42), Expect(2) = 2.7
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = -3

Query: 678 PPPPPP 661
           PPPPPP
Sbjct: 732 PPPPPP 737


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 29.9 bits (64), Expect = 0.40
 Identities = 14/46 (30%), Positives = 15/46 (32%)
 Frame = +1

Query: 451 PPPPXKKKXXXXXXXKKXXPPPPPPXXGGXXXXXXXXGXXGGXPPP 588
           PPP  +         KK  PPPPPP            G      PP
Sbjct: 293 PPPSSRVSAAALAANKKRPPPPPPPSRRNRGKPPIGNGSSNSSLPP 338



 Score = 26.6 bits (56), Expect = 3.7
 Identities = 18/65 (27%), Positives = 20/65 (30%), Gaps = 5/65 (7%)
 Frame = +1

Query: 409 KKXPPPXXGXXFXXPPPPXKKKXXXXXXXK-----KXXPPPPPPXXGGXXXXXXXXGXXG 573
           KK PPP        PPPP ++                 PPPPPP                
Sbjct: 308 KKRPPP--------PPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRS 359

Query: 574 GXPPP 588
             PPP
Sbjct: 360 APPPP 364


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 29.9 bits (64), Expect = 0.40
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = -3

Query: 681 PPPPPPPPXXXXGGGG 634
           PPPPPPPP      GG
Sbjct: 945 PPPPPPPPPLVSAAGG 960



 Score = 27.1 bits (57), Expect = 2.8
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = -3

Query: 678 PPPPPPPXXXXGGGGG 631
           PPPPPPP       GG
Sbjct: 945 PPPPPPPPPLVSAAGG 960


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -2

Query: 682 PPPPPPPP 659
           PPPPPPPP
Sbjct: 306 PPPPPPPP 313



 Score = 26.6 bits (56), Expect = 3.7
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -3

Query: 681 PPPPPPPP 658
           PPPPPPPP
Sbjct: 307 PPPPPPPP 314


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -3

Query: 681 PPPPPPPP 658
           PPPPPPPP
Sbjct: 189 PPPPPPPP 196



 Score = 26.6 bits (56), Expect = 3.7
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -2

Query: 682 PPPPPPPP 659
           PPPPPPPP
Sbjct: 190 PPPPPPPP 197


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -3

Query: 681 PPPPPPPP 658
           PPPPPPPP
Sbjct: 9   PPPPPPPP 16


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1217

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -3

Query: 681  PPPPPPPP 658
            PPPPPPPP
Sbjct: 1095 PPPPPPPP 1102


>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -3

Query: 681 PPPPPPPP 658
           PPPPPPPP
Sbjct: 370 PPPPPPPP 377


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,838,837
Number of Sequences: 5004
Number of extensions: 28864
Number of successful extensions: 383
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)