Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP05_FL5_L01
         (867 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol N-ace...    28   1.5  
SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomy...    28   1.5  
SPCC1183.06 |ung1||uracil DNA N-glycosylase Ung1|Schizosaccharom...    27   3.5  
SPCC1020.10 |oca2||serine/threonine protein kinase Oca2 |Schizos...    27   4.6  
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S...    26   8.0  
SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula...    26   8.0  
SPAC25H1.09 |mde5|meu30, SPAC4A8.01|alpha-amylase homolog Mde5|S...    26   8.0  

>SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol
           N-acetylglucosaminyltransferase Alg13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 162

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -2

Query: 161 YVARSESIMRDSDVAFSHSAALAIAQVRRNGNR 63
           Y    ES + D+ +  SH+ A +I Q  R+G R
Sbjct: 63  YAPEIESYIHDASIVISHAGAGSILQTLRSGKR 95


>SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 874

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 23/105 (21%), Positives = 45/105 (42%), Gaps = 3/105 (2%)
 Frame = +1

Query: 292 DKRLSWNAGEWGCSTWLVSSERLWGPDVVLLN---AAATTAGDYALRARVSNNGSVSWIK 462
           +K+L+     +    WL+S +R WG  + +++     A    +  L  ++ +   + + K
Sbjct: 415 EKKLAKRVKNYRLKDWLISRQRFWGTPIPMVHCETCGAVPVPESELPVKLPDLDKI-YEK 473

Query: 463 RLDISTPISMQLDNWPNDMQTCTFKFGSRMHNSDEMDFVIDKRIY 597
               ++P+S  L+ W     TC    G     +D MD  +D   Y
Sbjct: 474 G---TSPLS-NLETWMK--TTCPKCHGPATRETDTMDTFVDSSWY 512


>SPCC1183.06 |ung1||uracil DNA N-glycosylase
           Ung1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 322

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = +2

Query: 221 MLTFVSPSPPCEYRQIFKCYRIGSTND*VGTQGSGAAALGW 343
           +L  V PSP   +R  F+C+    TN+ +  Q      + W
Sbjct: 261 VLRSVHPSPLSAHRGFFECHHFKKTNEWLEEQYGPEKCINW 301


>SPCC1020.10 |oca2||serine/threonine protein kinase Oca2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 650

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = +1

Query: 421 RARVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHN 558
           RA +++   +  +KR DI    +   DNW ND+  C  + G  +H+
Sbjct: 588 RAVIAHMLELDPVKRYDIHRVFA---DNWINDISMCHMENGKVIHS 630


>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1944

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -1

Query: 321  LPCVPTQSFVDPIL*HLKICLYSHGGL 241
            L C P+ + +D IL  +K  +Y H G+
Sbjct: 1335 LICAPSNAAIDEILLRIKAGVYDHEGI 1361


>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
            protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1400

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +1

Query: 43   MSTTYIILLPFLLTCAIASAAECENATSLS 132
            +S TYIILLPF   C     A  +++  +S
Sbjct: 1023 LSKTYIILLPFQSLCPGGKQANHQSSEKMS 1052


>SPAC25H1.09 |mde5|meu30, SPAC4A8.01|alpha-amylase homolog
           Mde5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = +1

Query: 505 WPNDMQTCTFKFGSRMHNSDEMDFVIDKRIYSMFES 612
           WP D+ T    FG+     D  D + D+ +Y M ++
Sbjct: 105 WPQDLYTLNPHFGTEQDLIDLADALHDRGMYLMVDT 140


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,024,188
Number of Sequences: 5004
Number of extensions: 59653
Number of successful extensions: 145
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 432473040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)