Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP05_FL5_K21
(858 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 52 7e-09
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 48 1e-07
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 48 1e-07
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 48 1e-07
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 47 3e-07
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 47 3e-07
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 47 3e-07
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 46 4e-07
DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholi... 45 8e-07
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 45 1e-06
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 45 1e-06
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 45 1e-06
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 45 1e-06
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 45 1e-06
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 44 1e-06
AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic ac... 44 2e-06
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 43 3e-06
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 43 3e-06
DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channe... 43 4e-06
DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride c... 38 9e-05
DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated... 38 2e-04
DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride c... 37 2e-04
DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholi... 30 0.024
DQ667188-1|ABG75740.1| 383|Apis mellifera histamine-gated chlor... 24 2.1
AB231585-1|BAE17127.1| 898|Apis mellifera Mahya protein. 24 2.1
DQ667187-1|ABG75739.1| 428|Apis mellifera histamine-gated chlor... 23 2.7
DQ667195-1|ABG75747.1| 469|Apis mellifera cys-loop ligand-gated... 22 6.3
AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein. 22 8.3
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 52.0 bits (119), Expect = 7e-09
Identities = 41/129 (31%), Positives = 58/129 (44%), Gaps = 9/129 (6%)
Frame = +3
Query: 96 IASAAECENATSLSLMIDSLLATYDRESPPDSK----IVVNLTLHLRHA---NIRESEST 254
I SA C + D LL+ Y+R P S +VV L L L N+++ T
Sbjct: 9 ILSARICHGNPDAKRLYDDLLSNYNRLIRPVSNNNDTVVVKLGLRLSQLIDLNLKDQILT 68
Query: 255 VRILADLQMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLLNAAATTAGDYAL-RAR 428
+ L+ W D + W+ E+G T L V SE +W PD+VL N A G + +A
Sbjct: 69 TNVW--LEHEWQDHKFQWDPAEYGGVTELYVPSEHIWLPDIVLYNNADGEYGVTTMTKAI 126
Query: 429 VSNNGSVSW 455
+ G V W
Sbjct: 127 LHYTGKVLW 135
Score = 25.0 bits (52), Expect = 0.89
Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Frame = +1
Query: 490 CXLD--NWPNDMQTCTFKFGSRMHNSDXMD 573
C +D +P D QTC KFGS ++ +D
Sbjct: 145 CEIDVRYFPFDQQTCFMKFGSWTYDGIQID 174
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 47.6 bits (108), Expect = 1e-07
Identities = 28/113 (24%), Positives = 56/113 (49%), Gaps = 7/113 (6%)
Frame = +3
Query: 141 MIDSLLATYDRESPP----DSKIVVNLTLHLRHA-NIRESESTVRILADLQMNWIDKRLS 305
+++ LL++Y+ P + V + L+ ++ E + A L++ W+D L
Sbjct: 58 LLNELLSSYNTLERPVANESEPLEVKFGITLQQIIDVDEKNQILTTNAWLKLEWVDYNLQ 117
Query: 306 WNAGEW-GCSTWLVSSERLWRPDVVLLNAA-ATTAGDYALRARVSNNGSVSWI 458
WN E+ G ++ +LW+PD+++ N+A G Y V++NGS ++
Sbjct: 118 WNESEYGGVKDLRITPNKLWKPDILMYNSADEGFDGTYQTNVVVTHNGSCLYV 170
Score = 25.4 bits (53), Expect = 0.68
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Frame = +1
Query: 490 CXLD-NW-PNDMQTCTFKFGSRMHNSDXMDXV 579
C +D W P D Q C KFGS ++ + +D V
Sbjct: 179 CKIDITWFPFDDQHCDMKFGSWTYDGNQVDLV 210
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 47.6 bits (108), Expect = 1e-07
Identities = 28/113 (24%), Positives = 56/113 (49%), Gaps = 7/113 (6%)
Frame = +3
Query: 141 MIDSLLATYDRESPP----DSKIVVNLTLHLRHA-NIRESESTVRILADLQMNWIDKRLS 305
+++ LL++Y+ P + V + L+ ++ E + A L++ W+D L
Sbjct: 58 LLNELLSSYNTLERPVANESEPLEVKFGITLQQIIDVDEKNQILTTNAWLKLEWVDYNLQ 117
Query: 306 WNAGEW-GCSTWLVSSERLWRPDVVLLNAA-ATTAGDYALRARVSNNGSVSWI 458
WN E+ G ++ +LW+PD+++ N+A G Y V++NGS ++
Sbjct: 118 WNESEYGGVKDLRITPNKLWKPDILMYNSADEGFDGTYQTNVVVTHNGSCLYV 170
Score = 25.4 bits (53), Expect = 0.68
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Frame = +1
Query: 490 CXLD-NW-PNDMQTCTFKFGSRMHNSDXMDXV 579
C +D W P D Q C KFGS ++ + +D V
Sbjct: 179 CKIDITWFPFDDQHCDMKFGSWTYDGNQVDLV 210
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 47.6 bits (108), Expect = 1e-07
Identities = 32/123 (26%), Positives = 55/123 (44%), Gaps = 9/123 (7%)
Frame = +3
Query: 114 CENATSLSLMIDSLLATYDRESPPDSKIVVNLTLHLR-------HANIRESESTVRILAD 272
C + D LL+ Y++ P + LT+ ++ N++ T +
Sbjct: 19 CSGNPDAKRLYDDLLSNYNKLVRPVVNVTDALTVKIKLKLSQLIDVNLKNQIMTTNLW-- 76
Query: 273 LQMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLL-NAAATTAGDYALRARVSNNGS 446
++ +W D +L W+ E+G L V S+ +WRPD+VL NA A +A ++ G
Sbjct: 77 VEQSWYDYKLKWDPKEYGGVEMLHVPSDHIWRPDIVLYNNADGNFEVTLATKATLNYTGR 136
Query: 447 VSW 455
V W
Sbjct: 137 VEW 139
Score = 25.0 bits (52), Expect = 0.89
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +1
Query: 496 LDNWPNDMQTCTFKFGSRMHNSDXMD 573
++ +P D QTC KFGS ++ +D
Sbjct: 153 VEYFPFDEQTCVMKFGSWTYDGFQVD 178
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 46.8 bits (106), Expect = 3e-07
Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Frame = +3
Query: 231 NIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLNAA-ATTA 404
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 405 GDYALRARVSNNGSVSWI 458
G Y V++NGS ++
Sbjct: 85 GTYQTSVVVTHNGSCLYV 102
Score = 25.4 bits (53), Expect = 0.68
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Frame = +1
Query: 490 CXLD-NW-PNDMQTCTFKFGSRMHNSDXMDXV 579
C +D W P D Q C KFGS ++ + +D V
Sbjct: 111 CKIDITWFPFDDQHCDMKFGSWTYDGNQVDLV 142
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 46.8 bits (106), Expect = 3e-07
Identities = 36/135 (26%), Positives = 60/135 (44%), Gaps = 12/135 (8%)
Frame = +3
Query: 87 TCAIASAAECENATSLSLMIDSLLATYDRESPP----DSKIVVNLTLHLRH---ANIRES 245
+C +A + + D LL+ Y+R P ++ V + L L N++
Sbjct: 6 SCLVAPFPGASANSEAKRLYDDLLSNYNRLIRPVGNNSDRLTVKMGLRLSQLIDVNLKNQ 65
Query: 246 ESTVRILADLQMNWIDKRLSWNAGEWG-CSTWLVSSERLWRPDVVLLNAAATTAGDYAL- 419
T + ++ W D +L WN ++G T V SE +W PD+VL N A G+Y +
Sbjct: 66 IMTTNVW--VEQEWNDYKLKWNPDDYGGVDTLHVPSEHIWLPDIVLYNNA---DGNYEVT 120
Query: 420 ---RARVSNNGSVSW 455
+A + + G V W
Sbjct: 121 IMTKAILHHTGKVVW 135
Score = 24.2 bits (50), Expect = 1.6
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +1
Query: 496 LDNWPNDMQTCTFKFGSRMHNSDXMD 573
++ +P D QTC KFGS ++ +D
Sbjct: 149 VEYFPFDEQTCFMKFGSWTYDGYTVD 174
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 46.8 bits (106), Expect = 3e-07
Identities = 36/115 (31%), Positives = 55/115 (47%), Gaps = 10/115 (8%)
Frame = +3
Query: 141 MIDSLLATYDRESPPDSKIVVNLT--LHLRHANIRESESTVRILAD---LQMNWIDKRLS 305
+ D LL+ Y+R P LT L L+ + + E +++ ++ W D +L
Sbjct: 37 LYDDLLSNYNRLIRPVMNNTETLTVQLGLKLSQLIEMNLKNQVMTTNVWVEQRWNDYKLK 96
Query: 306 WNAGEWGCSTWL-VSSERLWRPDVVLLNAAATTAGDYAL----RARVSNNGSVSW 455
WN E+G L V SE +W PD+VL N A G+Y + +A + G VSW
Sbjct: 97 WNPEEYGGVEMLYVPSENIWLPDIVLYNNA---DGNYEVTLMTKATLKYTGDVSW 148
Score = 25.4 bits (53), Expect = 0.68
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +1
Query: 496 LDNWPNDMQTCTFKFGSRMHNSDXMD 573
++ +P D Q+C KFGS +N +D
Sbjct: 162 VEYFPFDEQSCIMKFGSWTYNGAQVD 187
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 46.0 bits (104), Expect = 4e-07
Identities = 30/112 (26%), Positives = 56/112 (50%), Gaps = 7/112 (6%)
Frame = +3
Query: 141 MIDSLLATYDRESPP--DSKIVVNLTLHLRHANIRESESTVRILAD---LQMNWIDKRLS 305
+ D LL+ Y++ P ++ V+ + + L+ + + + +I+ ++ +W D +L
Sbjct: 32 LYDDLLSNYNKLVRPVVNTSDVLRVCIKLKLSQLIDVNLKNQIMTTNLWVEQSWYDYKLR 91
Query: 306 WNAGEWGCSTWL-VSSERLWRPDVVLL-NAAATTAGDYALRARVSNNGSVSW 455
W E+G L V S+ +WRPD+VL NA A +A + + G V W
Sbjct: 92 WEPKEYGGVKMLHVPSDHIWRPDIVLYNNADGNFEVTLATKATIYHQGLVEW 143
Score = 25.0 bits (52), Expect = 0.89
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +1
Query: 496 LDNWPNDMQTCTFKFGSRMHNSDXMD 573
++ +P D QTC KFGS ++ +D
Sbjct: 157 VEYFPFDEQTCVLKFGSWTYDGFKVD 182
>DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholine
receptor beta2subunit protein.
Length = 427
Score = 45.2 bits (102), Expect = 8e-07
Identities = 27/95 (28%), Positives = 47/95 (49%), Gaps = 6/95 (6%)
Frame = +3
Query: 114 CENATSLSLMIDS---LLATYDRESPPDSKIV--VNLTLHLRHANIRESESTVRILADLQ 278
C++ TS S + L YDR+ P+ K ++ L ++H N+ E TV L+
Sbjct: 28 CKDITSTSALYRLKLYLFCDYDRDIIPEQKNATKIDFGLSIQHYNVDEYSHTVDFHVMLK 87
Query: 279 MNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVL 380
+ W L+W + E+ ++ V S +W PD+V+
Sbjct: 88 LMWEQSHLTWKSSEFDSINSIRVKSYEIWVPDIVM 122
Score = 23.8 bits (49), Expect = 2.1
Identities = 10/28 (35%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Frame = +1
Query: 487 LCXLDN--WPNDMQTCTFKFGSRMHNSD 564
+C D+ WP D+ CT S H S+
Sbjct: 158 VCEYDHTWWPYDILNCTIHIASWSHGSN 185
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 44.8 bits (101), Expect = 1e-06
Identities = 21/78 (26%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Frame = +3
Query: 231 NIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLNAA-ATTA 404
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 405 GDYALRARVSNNGSVSWI 458
G Y V+++GS ++
Sbjct: 85 GTYQTSVVVTHDGSCLYV 102
Score = 24.6 bits (51), Expect = 1.2
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Frame = +1
Query: 490 CXLD-NW-PNDMQTCTFKFGSRMHNSDXMDXV 579
C +D W P D Q C KFGS ++ + +D V
Sbjct: 111 CKMDVAWFPFDDQHCDMKFGSWTYDGNQVDLV 142
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 44.8 bits (101), Expect = 1e-06
Identities = 21/78 (26%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Frame = +3
Query: 231 NIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLNAA-ATTA 404
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 405 GDYALRARVSNNGSVSWI 458
G Y V+++GS ++
Sbjct: 85 GTYQTSVVVTHDGSCLYV 102
Score = 24.6 bits (51), Expect = 1.2
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Frame = +1
Query: 490 CXLD-NW-PNDMQTCTFKFGSRMHNSDXMDXV 579
C +D W P D Q C KFGS ++ + +D V
Sbjct: 111 CKIDIAWFPFDDQHCDMKFGSWTYDGNQVDLV 142
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 44.8 bits (101), Expect = 1e-06
Identities = 21/78 (26%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Frame = +3
Query: 231 NIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLNAA-ATTA 404
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 405 GDYALRARVSNNGSVSWI 458
G Y V+++GS ++
Sbjct: 85 GTYQTSVVVTHDGSCLYV 102
Score = 25.4 bits (53), Expect = 0.68
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Frame = +1
Query: 490 CXLD-NW-PNDMQTCTFKFGSRMHNSDXMDXV 579
C +D W P D Q C KFGS ++ + +D V
Sbjct: 111 CKIDITWFPFDDQHCDMKFGSWTYDGNQVDLV 142
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 44.8 bits (101), Expect = 1e-06
Identities = 21/78 (26%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Frame = +3
Query: 231 NIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLNAA-ATTA 404
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 405 GDYALRARVSNNGSVSWI 458
G Y V+++GS ++
Sbjct: 85 GTYQTSVVVTHDGSCLYV 102
Score = 24.6 bits (51), Expect = 1.2
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Frame = +1
Query: 490 CXLD-NW-PNDMQTCTFKFGSRMHNSDXMDXV 579
C +D W P D Q C KFGS ++ + +D V
Sbjct: 111 CKIDIAWFPFDDQHCDMKFGSWTYDGNQVDLV 142
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 44.8 bits (101), Expect = 1e-06
Identities = 21/78 (26%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Frame = +3
Query: 231 NIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLNAA-ATTA 404
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 405 GDYALRARVSNNGSVSWI 458
G Y V+++GS ++
Sbjct: 85 GTYQTSVVVTHDGSCLYV 102
Score = 24.6 bits (51), Expect = 1.2
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Frame = +1
Query: 490 CXLD-NW-PNDMQTCTFKFGSRMHNSDXMDXV 579
C +D W P D Q C KFGS ++ + +D V
Sbjct: 111 CKMDIAWFPFDDQHCDMKFGSWTYDGNQVDLV 142
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 44.4 bits (100), Expect = 1e-06
Identities = 33/129 (25%), Positives = 62/129 (48%), Gaps = 7/129 (5%)
Frame = +3
Query: 93 AIASAAECENATSLSLMIDSLLATYD-RESPPDSK---IVVNLTLHLRHA-NIRESESTV 257
A+A++ + +++ LL TY+ E P ++ +V++ L L ++ E +
Sbjct: 11 ALAASGLVNGGSHEKRLLNDLLDTYNVLERPVGNESEPLVLSFGLTLMQIIDVDEKNQLL 70
Query: 258 RILADLQMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLLNAA-ATTAGDYALRARV 431
L++ W D + WN ++G L + RLW+PDV++ N+A G Y V
Sbjct: 71 ITNLWLKLEWNDVNMRWNVSDYGGVRDLRIPPHRLWKPDVLMYNSADEGFDGTYPTNVVV 130
Query: 432 SNNGSVSWI 458
NNG+ ++
Sbjct: 131 KNNGTCLYV 139
Score = 26.2 bits (55), Expect = 0.39
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 5/54 (9%)
Frame = +1
Query: 490 CXLD-NW-PNDMQTCTFKFGSRMHNSDXMD-XVXDXKEYXVCS--XSGXWDVTG 636
C +D W P D Q C KFGS ++ +D + D + S +G WD+ G
Sbjct: 148 CKIDITWFPFDDQRCEMKFGSWTYDGFQLDLQLQDEAGGDISSFITNGEWDLLG 201
>AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic
acetylcholine Apisa7-2 subunit protein.
Length = 461
Score = 43.6 bits (98), Expect = 2e-06
Identities = 27/91 (29%), Positives = 39/91 (42%), Gaps = 3/91 (3%)
Frame = +3
Query: 195 IVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPD 371
+V L+LH ++ E + + W D L WNA E+ G V R+WRPD
Sbjct: 33 VVFGLSLH-HIIDVDEKNQILTTNCWVTQIWTDHHLKWNASEFAGIRVIRVPYNRVWRPD 91
Query: 372 VVLLNAAATTAGDYALRAR--VSNNGSVSWI 458
+L N A + VS+ G V W+
Sbjct: 92 TILYNNADPQYSSAVINTNVIVSHTGEVVWL 122
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 43.2 bits (97), Expect = 3e-06
Identities = 26/95 (27%), Positives = 48/95 (50%), Gaps = 6/95 (6%)
Frame = +3
Query: 192 KIVVNLTL-HLRHANIRESESTVRILADLQMNWIDKRLSWNAGEWG-CSTWLVSSERLWR 365
K+ VN L ++ N+ E ++ L+ W D +L W+ ++G + +++W+
Sbjct: 51 KVHVNFGLAFVQLINVNEKNQIMKSNVWLRFIWTDYQLQWDEADYGGIGVLRLPPDKVWK 110
Query: 366 PDVVLLNAAATTAGDYALRAR----VSNNGSVSWI 458
PD+VL N A G+Y +R + + NG V W+
Sbjct: 111 PDIVLFNNA---DGNYEVRYKSNVLIYPNGDVLWV 142
Score = 31.1 bits (67), Expect = 0.014
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 6/56 (10%)
Frame = +1
Query: 481 QFLCXLD--NWPNDMQTCTFKFGSRMHNSDXMD-XVXDXKEYXVCS---XSGXWDV 630
Q C +D +P D QTC KFGS N D + + + K + S SG WD+
Sbjct: 148 QSSCTIDVTYFPFDQQTCIMKFGSWTFNGDQVSLALYNNKNFVDLSDYWKSGTWDI 203
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 43.2 bits (97), Expect = 3e-06
Identities = 32/115 (27%), Positives = 59/115 (51%), Gaps = 10/115 (8%)
Frame = +3
Query: 141 MIDSLLATYDRESPP--DSKIVVNLTLHLRHANIRESESTVRILAD---LQMNWIDKRLS 305
+ D LL+ Y++ P ++ V+ + + L+ + + + +I+ ++ +W D +L
Sbjct: 32 LYDDLLSNYNKLVRPVVNTSDVLRVCIKLKLSQLIDVNLKNQIMTTNLWVEQSWYDYKLR 91
Query: 306 WNAGEWGCSTWL-VSSERLWRPDVVLLNAAATTAGDYAL----RARVSNNGSVSW 455
W E+G L V S+ +WRPD+VL N A G+Y + +A V +G V W
Sbjct: 92 WEPKEYGGVKMLHVPSDHIWRPDIVLYNNA---DGNYEVTLMTKATVYYSGLVVW 143
Score = 23.8 bits (49), Expect = 2.1
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +1
Query: 505 WPNDMQTCTFKFGSRMHNSDXMD 573
+P D+QTC K GS ++ +D
Sbjct: 160 FPYDVQTCVLKLGSWTYDGFKVD 182
>DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channel
protein.
Length = 463
Score = 42.7 bits (96), Expect = 4e-06
Identities = 24/93 (25%), Positives = 46/93 (49%), Gaps = 4/93 (4%)
Frame = +3
Query: 120 NATSLSLMIDSLLATYDRESPPD---SKIVVNLTLHLRHAN-IRESESTVRILADLQMNW 287
N +++S ++D+LL YD PD V + + +R I E + T + + +W
Sbjct: 2 NHSNISELLDNLLRGYDNSVRPDFGGPPATVEVDIMVRSMGPISEVDMTYSMDCYFRQSW 61
Query: 288 IDKRLSWNAGEWGCSTWLVSSERLWRPDVVLLN 386
+D+RL++ G+ + + R+W+PD N
Sbjct: 62 VDRRLAFQGGKETLALSISMLARIWKPDTYFYN 94
Score = 25.0 bits (52), Expect = 0.89
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +1
Query: 496 LDNWPNDMQTCTFKFGS 546
L+N+P D Q C +FGS
Sbjct: 134 LENFPMDTQRCPLQFGS 150
>DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 38.3 bits (85), Expect = 9e-05
Identities = 35/153 (22%), Positives = 70/153 (45%), Gaps = 13/153 (8%)
Frame = +3
Query: 120 NATSLSLMIDSLLATYDRESPPD---SKIVVNLTLH-LRHANIRESESTVRILADLQMNW 287
N ++S ++DS +YD+ P+ + V +T++ L +++ E + + + W
Sbjct: 8 NDVNISAILDSFSVSYDKRVRPNYGGPPVEVGVTMYVLSISSLSEVKMDFTLDFYFRQFW 67
Query: 288 IDKRLSWNAGEWGCSTWLVSSE---RLWRPDVVLLNA------AATTAGDYALRARVSNN 440
D RL++ G T V SE +W PD +N ATT+ ++ R+ ++
Sbjct: 68 TDPRLAFKK-RTGVETLSVGSEFIKNIWVPDTFFVNEKQSYFHIATTSNEF---IRIHHS 123
Query: 441 GSVSWIKRLDISTPISMXVRQLAQRHADLHVQV 539
GS++ RL I+ M ++ H+++
Sbjct: 124 GSITRSIRLTITASCPMNLQYFPMDRQLCHIEI 156
>DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 510
Score = 37.5 bits (83), Expect = 2e-04
Identities = 29/132 (21%), Positives = 56/132 (42%), Gaps = 8/132 (6%)
Frame = +3
Query: 129 SLSLMIDSLLATYDRESPPD----SKIVVNLTLHLRHAN-IRESESTVRILADLQMNWID 293
++++++++LL Y+ P + VV + +R + E + + + +W D
Sbjct: 36 NITMVLENLLMNYENNQLPTHGKGTPTVVKTNILIRSMGPVSELDMDYSMDCYFRQSWRD 95
Query: 294 KRLSWNAGEWGCSTWLVSSERLWRPDVVLLNAAATTAGDYAL---RARVSNNGSVSWIKR 464
RLS+ S + ER+WRPD N + + R+S +G + + R
Sbjct: 96 SRLSFLGPIKSLSLSIKMLERIWRPDTYFYNGKHSYVHTITVPNKLLRISQDGDILYSMR 155
Query: 465 LDISTPISMXVR 500
L I M +R
Sbjct: 156 LTIKAKCPMELR 167
>DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 37.1 bits (82), Expect = 2e-04
Identities = 35/153 (22%), Positives = 69/153 (45%), Gaps = 13/153 (8%)
Frame = +3
Query: 120 NATSLSLMIDSLLATYDRESPPD---SKIVVNLTLH-LRHANIRESESTVRILADLQMNW 287
N ++S ++DS +YD+ P+ + V +T++ L +++ E + + W
Sbjct: 8 NDVNISAILDSFSVSYDKRVRPNYGGPPVEVGVTMYVLSISSVSEVLMDFTLDFYFRQFW 67
Query: 288 IDKRLSWNAGEWGCSTWLVSSE---RLWRPDVVLLNA------AATTAGDYALRARVSNN 440
D RL++ G T V SE +W PD +N ATT+ ++ R+ ++
Sbjct: 68 TDPRLAFKK-RTGVETLSVGSEFIKNIWVPDTFFVNEKQSYFHIATTSNEF---IRIHHS 123
Query: 441 GSVSWIKRLDISTPISMXVRQLAQRHADLHVQV 539
GS++ RL I+ M ++ H+++
Sbjct: 124 GSITRSIRLTITASCPMNLQYFPMDRQLCHIEI 156
>DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholine
receptor alpha9subunit protein.
Length = 431
Score = 30.3 bits (65), Expect = 0.024
Identities = 12/44 (27%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Frame = +1
Query: 502 NWPNDMQTCTFKFGSRMHNSDXMDXVXDXKEYXV--CSXSGXWD 627
+WP D C FGS +H+ + ++ D K + + + + WD
Sbjct: 175 SWPYDTHRCRINFGSWVHSGEEVNIFLDKKGFHMDGYTNNSKWD 218
>DQ667188-1|ABG75740.1| 383|Apis mellifera histamine-gated chloride
channel protein.
Length = 383
Score = 23.8 bits (49), Expect = 2.1
Identities = 10/37 (27%), Positives = 17/37 (45%)
Frame = +1
Query: 460 SAWTLALQFLCXLDNWPNDMQTCTFKFGSRMHNSDXM 570
S TL L +++P+D Q C+ S H + +
Sbjct: 124 SKLTLVLSCAMKFESYPHDTQICSMMIESLSHTTQDL 160
>AB231585-1|BAE17127.1| 898|Apis mellifera Mahya protein.
Length = 898
Score = 23.8 bits (49), Expect = 2.1
Identities = 10/33 (30%), Positives = 16/33 (48%)
Frame = -2
Query: 554 CILEPNLNVQVCMSLGQLSNXHRNWSANVQALY 456
C L PN + VC+ + + HR A+ +Y
Sbjct: 93 CELSPNSTIAVCVCMRKCPRRHRPVCASNGKIY 125
>DQ667187-1|ABG75739.1| 428|Apis mellifera histamine-gated chloride
channel protein.
Length = 428
Score = 23.4 bits (48), Expect = 2.7
Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Frame = +1
Query: 472 LALQFLCXLDN--WPNDMQTCTFKFGSRMHNSDXM 570
L L+ C ++ +P+D Q C + S H +D M
Sbjct: 157 LTLKLSCAMNFLIYPHDTQECKLQMESLSHTTDEM 191
>DQ667195-1|ABG75747.1| 469|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 469
Score = 22.2 bits (45), Expect = 6.3
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = +1
Query: 496 LDNWPNDMQTCTFKFGSRMHN 558
L+ +P D+Q C F S HN
Sbjct: 146 LEKFPFDVQECPLIFESWTHN 166
>AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein.
Length = 735
Score = 21.8 bits (44), Expect = 8.3
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = -2
Query: 338 PSAAAPFPCVPTQS 297
PSA AP P +P S
Sbjct: 411 PSAGAPMPPIPNMS 424
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 204,875
Number of Sequences: 438
Number of extensions: 4125
Number of successful extensions: 85
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27673956
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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