Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP05_FL5_J14
         (792 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    25   1.1  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   9.9  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +3

Query: 204 PPKXXXPPPPP 236
           PPK   PPPPP
Sbjct: 338 PPKPAPPPPPP 348



 Score = 21.4 bits (43), Expect = 9.9
 Identities = 11/25 (44%), Positives = 11/25 (44%)
 Frame = +3

Query: 171 PPKXKXXXPPPPPKXXXPPPPPL*K 245
           PPK     PPPPP    P    L K
Sbjct: 338 PPKPAP--PPPPPSSSGPDSAKLDK 360


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 12/51 (23%), Positives = 17/51 (33%), Gaps = 1/51 (1%)
 Frame = +3

Query: 168 PPPKXKXXXPPPPPKXXXPPPPPL*KKKXXXXGXPPPP-XEKXXVPPPXGV 317
           P P+      P  P+   PP P          G PP     +  + P  G+
Sbjct: 21  PGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNPSQMMISPASGI 71


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.315    0.146    0.531 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 218,868
Number of Sequences: 438
Number of extensions: 9248
Number of successful extensions: 3
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25003662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)