Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP05_FL5_F23
         (902 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1420.01c ||SPAC56E4.08c|DUF1752 family protein|Schizosacchar...    28   1.6  
SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger protein|Schiz...    28   1.6  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    27   3.6  
SPAC17G6.02c |||RTA1-like protein|Schizosaccharomyces pombe|chr ...    27   4.8  
SPAC6G9.11 |syb1||synaptobrevin |Schizosaccharomyces pombe|chr 1...    27   4.8  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    26   6.4  
SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|...    26   8.4  

>SPAC1420.01c ||SPAC56E4.08c|DUF1752 family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 580

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +1

Query: 46  RPQNRRSARTSLSDNAFPRFLLVITPP 126
           RPQ +RS+   LS +AF +F+   +PP
Sbjct: 139 RPQAKRSSSRLLSTDAFSQFISSFSPP 165


>SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 547

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 28/76 (36%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
 Frame = +3

Query: 504 TGTETKSNSVTV-QSLPNVS--SIIKGYRDAYLVNLEAVVFPSXPSLKIPVTVDLCWTTA 674
           TG       +T+ QSL N+S  S I   R     N  A  FPS  S  +P  VDL     
Sbjct: 308 TGVSLSRPRLTLDQSLGNLSLGSGINQRRQVPRSNSYAGAFPSVVSASLPTKVDLN-HQM 366

Query: 675 DVTVEGVNVLATPSSS 722
           DV+ E    L+TP  S
Sbjct: 367 DVSDEEQRFLSTPLGS 382


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +3

Query: 486  RLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRD-AYLVN 599
            R+Y  L  T   ++S    + PN S + +GY + A+L+N
Sbjct: 2840 RVYLPLVPTIQANSSADSSNPPNTSFLFRGYHETAWLIN 2878


>SPAC17G6.02c |||RTA1-like protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 324

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +3

Query: 237 DLFMEEIVPLVVSAASAIPSLVNAFSSSKPPQTD 338
           D+F  + +P++ ++A  IPSL  A   SK P T+
Sbjct: 241 DIF--DFIPMIFTSALLIPSLYPALERSKLPFTE 272


>SPAC6G9.11 |syb1||synaptobrevin |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 121

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -2

Query: 745 ARPPIVMREDEGVASTLTPSTVTSAVVQQRSTVTGILR 632
           A P   +R     AS+ TP+  T+A+ QQ     GI+R
Sbjct: 11  AEPSAAVRSGNAAASS-TPNMKTAAIQQQIDDTVGIMR 47


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 23/102 (22%), Positives = 36/102 (35%), Gaps = 1/102 (0%)
 Frame = +3

Query: 504 TGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSXPSLKIPVTVDLCWTTADVT 683
           T T   S  +T  +    +S+   Y    + +    +  S P    PVT   C T+  V 
Sbjct: 482 TSTPVTSTPLTTTNCTTSTSV--PYTSTPVTSSNYTISSSTPVTSTPVTTTNCTTSTSVL 539

Query: 684 VEGVNVLATP-SSSRITIGGLALCIKPPPLRSRVINRSSIPI 806
                V +TP +++  T          P   S     SS P+
Sbjct: 540 YTSTPVTSTPLATTNCTTSTSVPYTSTPVTSSNYTISSSTPV 581


>SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1036

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 16/30 (53%), Positives = 20/30 (66%)
 Frame = +3

Query: 567 IKGYRDAYLVNLEAVVFPSXPSLKIPVTVD 656
           +K  RD YL NLEA  FPS   +KI +T+D
Sbjct: 378 LKTRRDQYLTNLEA--FPSSLFMKI-LTLD 404


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,354,469
Number of Sequences: 5004
Number of extensions: 64583
Number of successful extensions: 190
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 456499320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)