Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP05_FL5_F16
         (878 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein Did4...    31   0.29 
SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr 1|||M...    27   4.7  
SPCC1020.10 |oca2||serine/threonine protein kinase Oca2 |Schizos...    26   6.1  
SPAC3G6.10c |||GARP complex subunit Vps51 |Schizosaccharomyces p...    26   8.1  
SPAC9E9.03 |leu2||3-isopropylmalate dehydratase Leu2 |Schizosacc...    26   8.1  
SPAC25H1.09 |mde5|meu30, SPAC4A8.01|alpha-amylase homolog Mde5|S...    26   8.1  

>SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein
           Did4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 210

 Score = 30.7 bits (66), Expect = 0.29
 Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = +3

Query: 246 VRVHRADTGRSSNELDRQTTELERRGMGL-QHLAG 347
           +R H+   GR+  ELDR+ T+L++R   L Q + G
Sbjct: 18  LRAHQRSLGRAERELDRERTKLDQRERALIQEIKG 52


>SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 342

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -3

Query: 324 FPCVPTQSFVDPIHLKICQYPHGGL 250
           F  +P Q+F    H+++C YP GG+
Sbjct: 150 FKEIPQQNFT---HVRLCMYPDGGI 171


>SPCC1020.10 |oca2||serine/threonine protein kinase Oca2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 650

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +1

Query: 424 RARVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMH 558
           RA +++   +  +KR DI    +   DNW ND+  C  + G  +H
Sbjct: 588 RAVIAHMLELDPVKRYDIHRVFA---DNWINDISMCHMENGKVIH 629


>SPAC3G6.10c |||GARP complex subunit Vps51 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 159

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 17/44 (38%), Positives = 25/44 (56%)
 Frame = +1

Query: 7   DHSLGIASIDQLS*NVDDLYYSCYRFLLTCAIASAAECENATSL 138
           D SL +ASI  LS +   L Y+ Y+ LL  + A  + C+N  +L
Sbjct: 79  DKSL-VASIQGLSVDHRSLVYNHYKHLLEASDAINSFCKNLNTL 121


>SPAC9E9.03 |leu2||3-isopropylmalate dehydratase Leu2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 16/57 (28%), Positives = 25/57 (43%)
 Frame = -3

Query: 678 PTSPRXWLCTALDRSVTSHXPDSNIXVYSFVNHEIHFVTXVHPRTELERASLHVVGP 508
           PT PR  +    D +   H PDS   V +  N+   F    +   +  +  +HV+GP
Sbjct: 72  PTDPRKDM---KDIASFIHQPDSRTQVLALENNIKEFGLTYYGMNDRRQGIVHVIGP 125


>SPAC25H1.09 |mde5|meu30, SPAC4A8.01|alpha-amylase homolog
           Mde5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = +1

Query: 508 WPNDMQTCTFKFGSRMHXSDEMDFVIDKXIYXYV 609
           WP D+ T    FG+     D  D + D+ +Y  V
Sbjct: 105 WPQDLYTLNPHFGTEQDLIDLADALHDRGMYLMV 138


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,141,498
Number of Sequences: 5004
Number of extensions: 59648
Number of successful extensions: 152
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)