Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP05_FL5_F12
         (845 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    24   1.5  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    24   1.5  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    23   3.5  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    23   3.5  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    23   3.5  
EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate isome...    22   6.2  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = +3

Query: 132 WFRKWRIDINPTKSAAVLFKRG-RPPNITSSIPLRSRRANTS 254
           W +  +I++NP+ +  V  KR   P  + + + + S  A+ S
Sbjct: 841 WLKGGKIELNPSTNYRVTVKREVTPDGVIAQLQISSAEASDS 882


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = +3

Query: 132 WFRKWRIDINPTKSAAVLFKRG-RPPNITSSIPLRSRRANTS 254
           W +  +I++NP+ +  V  KR   P  + + + + S  A+ S
Sbjct: 837 WLKGGKIELNPSTNYRVTVKREVTPDGVIAQLQISSAEASDS 878


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
 Frame = +3

Query: 426 KLSLRNKVTLYK-TCIRPVMTYASVVFAHAARTHLKSLQVIQSRFCRIAVGAPWVP*ECG 602
           K+S    + +Y  TC   VM +AS++         K +Q+ ++RF +IA          G
Sbjct: 276 KISYVKSIDVYLGTCF--VMVFASLLEYATVGYMAKRIQMRKNRFQKIAESMKTARENPG 333

Query: 603 SPRRPG 620
            P  PG
Sbjct: 334 PPGVPG 339


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
 Frame = +3

Query: 426 KLSLRNKVTLYK-TCIRPVMTYASVVFAHAARTHLKSLQVIQSRFCRIAVGAPWVP*ECG 602
           K+S    + +Y  TC   VM +AS++         K +Q+ ++RF +IA          G
Sbjct: 276 KISYVKSIDVYLGTCF--VMVFASLLEYATVGYMAKRIQMRKNRFQKIAESMKTARENPG 333

Query: 603 SPRRPG 620
            P  PG
Sbjct: 334 PPGVPG 339


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
 Frame = +3

Query: 426 KLSLRNKVTLYK-TCIRPVMTYASVVFAHAARTHLKSLQVIQSRFCRIAVGAPWVP*ECG 602
           K+S    + +Y  TC   VM +AS++         K +Q+ ++RF +IA          G
Sbjct: 215 KISYVKSIDVYLGTCF--VMVFASLLEYATVGYMAKRIQMRKNRFQKIAESMKTARENPG 272

Query: 603 SPRRPG 620
            P  PG
Sbjct: 273 PPGVPG 278


>EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate
           isomerase protein.
          Length = 247

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +3

Query: 234 SRRANTSAVSPITLFGQPIPWV 299
           ++ A T  +SP  L    IPWV
Sbjct: 69  AKGAFTGEISPAMLLDNGIPWV 90


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 220,854
Number of Sequences: 438
Number of extensions: 4501
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27188448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)