Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP05_FL5_F09
(828 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 32 0.086
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 30 0.46
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 28 1.4
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 28 1.4
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 28 1.4
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 27 2.5
SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol N-ace... 27 3.2
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 3.2
SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate... 27 4.3
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 26 7.5
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 26 7.5
SPBC660.05 |||conserved fungal protein|Schizosaccharomyces pombe... 25 9.9
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 25 9.9
SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase Cdc... 25 9.9
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 32.3 bits (70), Expect = 0.086
Identities = 38/175 (21%), Positives = 40/175 (22%), Gaps = 3/175 (1%)
Frame = -3
Query: 814 PPPXXXXXXPPXXKXXXPPPXXGXPRXXXXXKXPRXPPXPXGXPP---PXXAXRXXPPPR 644
PP P P P P P P P G PP P A P P
Sbjct: 1050 PPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPA-PSGIPPVPKPSVAAPPVPKPS 1108
Query: 643 XXXPPXPXPXGXXXAXXXXCXXXKPX*XXGGPXTPKLXXXXXXXGGPXXXTXXKRGGXXF 464
PP P P G G P PK P +
Sbjct: 1109 VAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAA 1168
Query: 463 PPXXFXKEXGPXY*XXGXGGGXXPXRGPTRXXX*XVXPPTXXPGXPQPXXXAPXP 299
PP P G P P+ P P P P P P
Sbjct: 1169 PPVPAPSSGIPP--VPKPAAGVPPVPPPSEAPP-VPKPSVGVPPVPPPSTAPPVP 1220
Score = 27.5 bits (58), Expect = 2.5
Identities = 21/71 (29%), Positives = 21/71 (29%), Gaps = 3/71 (4%)
Frame = -3
Query: 820 GXPP-PXXXXXXPPXXKXXXPPPXXGXPRXXXXXKXPRXPPXPXG--XPPPXXAXRXXPP 650
G PP P PP PPP P P PP P P P
Sbjct: 1177 GIPPVPKPAAGVPPV-----PPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPV 1231
Query: 649 PRXXXPPXPXP 617
P PP P P
Sbjct: 1232 PTAKAPPVPAP 1242
Score = 27.5 bits (58), Expect = 2.5
Identities = 13/30 (43%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Frame = -1
Query: 702 PPPXXXPP-PXPXXXLPPPPGXXXPXXPXP 616
PPP PP P P LPP P P P
Sbjct: 1211 PPPSTAPPVPTPSAGLPPVPVPTAKAPPVP 1240
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 29.9 bits (64), Expect = 0.46
Identities = 19/65 (29%), Positives = 19/65 (29%), Gaps = 4/65 (6%)
Frame = -3
Query: 811 PPXXXXXXPPXXKXXXPP--PXXGXPRXXXXXKXPRXPPXPXGXP--PPXXAXRXXPPPR 644
PP PP PP P P PP P G P PP PPP
Sbjct: 420 PPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPA 479
Query: 643 XXXPP 629
P
Sbjct: 480 PAPAP 484
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 28.3 bits (60), Expect = 1.4
Identities = 15/47 (31%), Positives = 15/47 (31%), Gaps = 1/47 (2%)
Frame = -3
Query: 760 PPXXGXPRXXXXXKXPRXPPXPXGXPPPXXA-XRXXPPPRXXXPPXP 623
PP P PP P PPP A PP PP P
Sbjct: 1690 PPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLP 1736
Score = 25.4 bits (53), Expect = 9.9
Identities = 10/28 (35%), Positives = 11/28 (39%)
Frame = -2
Query: 698 PRGXXPPPXRXXXXPPPQGXXPPXPXXP 615
P+ PP PPP PP P P
Sbjct: 1694 PQSAAPPQMSAPTPPPPPMSVPPPPSAP 1721
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 28.3 bits (60), Expect = 1.4
Identities = 13/28 (46%), Positives = 13/28 (46%)
Frame = -1
Query: 699 PPXXXPPPXPXXXLPPPPGXXXPXXPXP 616
PP PPP PPPPG P P P
Sbjct: 5 PPGNPPPP------PPPPGFEPPSQPPP 26
Score = 26.6 bits (56), Expect = 4.3
Identities = 10/24 (41%), Positives = 10/24 (41%)
Frame = -2
Query: 680 PPXRXXXXPPPQGXXPPXPXXPXP 609
PP PPP G PP P P
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPP 28
Score = 25.8 bits (54), Expect = 7.5
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = -1
Query: 702 PPPXXXPPPXPXXXLPPPPG 643
PPP PP P PPPPG
Sbjct: 14 PPPGFEPPSQPP--PPPPPG 31
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 28.3 bits (60), Expect = 1.4
Identities = 20/59 (33%), Positives = 20/59 (33%), Gaps = 1/59 (1%)
Frame = +3
Query: 648 GGGXXRXAXXGGGXPXGXGGXRGXFXXXXXRGXPXXGGGXXXLXXGGXXXXXXG-GGXP 821
GGG GG P G GG G F G G G GG G GG P
Sbjct: 187 GGGFGGFGGGSGGPPPGPGGF-GGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGP 244
Score = 26.2 bits (55), Expect = 5.7
Identities = 21/71 (29%), Positives = 21/71 (29%)
Frame = +2
Query: 491 GXXXGAPXXXXXXXXFGGXGXPXXSXGFXXXAXXXXSXXXAXGXGXXGXXXPGGGGXXXX 670
G G P FGG G G G G G PGG G
Sbjct: 195 GGSGGPPPGPGGFGGFGGFGGEGHHHG-GHGGFGGGPGGFEGGPGGFGGG-PGGFGGGLG 252
Query: 671 GXGGGXXXGGG 703
G GGG GG
Sbjct: 253 GFGGGPGGFGG 263
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 27.5 bits (58), Expect = 2.5
Identities = 19/60 (31%), Positives = 19/60 (31%), Gaps = 3/60 (5%)
Frame = -3
Query: 721 KXPRXPPXPXGXPPPXXAXRXXPPP---RXXXPPXPXPXGXXXAXXXXCXXXKPX*XXGG 551
K P PP P P A PPP PP P P G A P GG
Sbjct: 730 KSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGG 789
Score = 27.5 bits (58), Expect = 2.5
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = -1
Query: 702 PPPXXXPPPXPXXXLPPPP 646
P P PPP P PPPP
Sbjct: 746 PAPIPVPPPAPIMGGPPPP 764
>SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol
N-acetylglucosaminyltransferase Alg13
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 162
Score = 27.1 bits (57), Expect = 3.2
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = -2
Query: 146 YVARSESIMRDSDVAFSHSAALAIAQVRRNGNK 48
Y ES + D+ + SH+ A +I Q R+G +
Sbjct: 63 YAPEIESYIHDASIVISHAGAGSILQTLRSGKR 95
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 27.1 bits (57), Expect = 3.2
Identities = 19/62 (30%), Positives = 19/62 (30%)
Frame = -1
Query: 795 AXAPPXXXXXPRPXGXGXPGXXXRXKXLXXXPPPXXXPPPXPXXXLPPPPGXXXPXXPXP 616
A APP RP P PP PP P LPPP P P
Sbjct: 127 APAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSS-LPPPAQPAAPVKSPP 185
Query: 615 XA 610
A
Sbjct: 186 SA 187
Score = 26.2 bits (55), Expect = 5.7
Identities = 17/58 (29%), Positives = 18/58 (31%), Gaps = 1/58 (1%)
Frame = -3
Query: 787 PPXXKXXXPPPXXGXPRXXXXXKXP-RXPPXPXGXPPPXXAXRXXPPPRXXXPPXPXP 617
PP + PP PR P PP P PP PPP P P
Sbjct: 130 PPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPP---IPSSLPPPAQPAAPVKSP 184
>SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate
transferase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 453
Score = 26.6 bits (56), Expect = 4.3
Identities = 13/56 (23%), Positives = 24/56 (42%)
Frame = -2
Query: 173 WSPGGESRSYVARSESIMRDSDVAFSHSAALAIAQVRRNGNKNNISRRHFMTTDLF 6
WS G + +ESI+ + +L ++ R + +N S H + T +F
Sbjct: 242 WSHGLTPEVFWQNTESILTCPEEQLEQKISLLLSSTRNSPTMSNSSLTHLLPTPIF 297
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 25.8 bits (54), Expect = 7.5
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Frame = -2
Query: 209 HVSNAGSG*LRFWSPGGESRSYVARSESIMR----DSDVAFSHSAALAIAQVRRNGNKNN 42
H+S G R ++ GG SY A+ + R D+ V ++ SAAL + + R + ++
Sbjct: 433 HLSGMTMGMRRMFTQGG---SYSAQERGLCRLEQKDTVVRYAQSAALYLIFLLRRPSADS 489
Query: 41 ISRRH 27
RRH
Sbjct: 490 GIRRH 494
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase
Tlh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1919
Score = 25.8 bits (54), Expect = 7.5
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Frame = -2
Query: 209 HVSNAGSG*LRFWSPGGESRSYVARSESIMR----DSDVAFSHSAALAIAQVRRNGNKNN 42
H+S G R ++ GG SY A+ + R D+ V ++ SAAL + + R + ++
Sbjct: 433 HLSGMTMGMRRMFTQGG---SYSAQERGLCRLEQKDTVVRYAQSAALYLIFLLRRPSADS 489
Query: 41 ISRRH 27
RRH
Sbjct: 490 GIRRH 494
>SPBC660.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 143
Score = 25.4 bits (53), Expect = 9.9
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = -1
Query: 681 PPXPXXXLPPPPG 643
PP P +PPPPG
Sbjct: 41 PPIPGLHIPPPPG 53
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 25.4 bits (53), Expect = 9.9
Identities = 17/49 (34%), Positives = 17/49 (34%)
Frame = +3
Query: 618 GXGXGGXXXLGGGXXRXAXXGGGXPXGXGGXRGXFXXXXXRGXPXXGGG 764
G GG GGG R GGG GG G RG G G
Sbjct: 19 GGFNGGRGGFGGG--RGGARGGGRGGARGGRGGRGGARGGRGGSSGGRG 65
>SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase
Cdc7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1062
Score = 25.4 bits (53), Expect = 9.9
Identities = 15/55 (27%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Frame = -1
Query: 273 SIQFI*RSACIRTVNSDSRMLACLKCRVRLTTILESGGGVPIV--RCEERVDHEG 115
++Q + + CI S +RML L +++ L + G PI+ + +E++ H+G
Sbjct: 917 NVQLVLKVFCISQSASSNRMLDTLGRVCQISPRLAASYGQPIIFQKFKEKLTHKG 971
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,520,479
Number of Sequences: 5004
Number of extensions: 45727
Number of successful extensions: 190
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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