Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP05_FL5_F08
         (865 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP4H10.17c |||carboxyl methyl esterase|Schizosaccharomyces pom...    30   0.49 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   0.64 
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    27   2.6  
SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces pomb...    26   6.0  

>SPBP4H10.17c |||carboxyl methyl esterase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 341

 Score = 29.9 bits (64), Expect = 0.49
 Identities = 12/32 (37%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = +1

Query: 4   WKKWYTLRETLEG-GGAVDGTIRGSRMVPRPD 96
           W+ ++  + T+ G  GA++GTI G   +P+PD
Sbjct: 37  WRNYFDEKLTIPGESGALNGTINGYLTLPQPD 68


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 29.5 bits (63), Expect = 0.64
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -1

Query: 331 PPRLEPPRSNYSFAGAPFPPRAKLATPP 248
           PP   PPRSN +    P PP+ + A PP
Sbjct: 337 PPPPPPPRSNAA-GSIPLPPQGRSAPPP 363


>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1060

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +2

Query: 65   YGAPVWCHALTRKNVAALRRPQRAIAVRAIRG 160
            YG    C  LT +N++A  R Q   AVR + G
Sbjct: 1011 YGPSFICKLLTHENISASHRQQLQSAVRNVLG 1042


>SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 224

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 24/78 (30%), Positives = 32/78 (41%), Gaps = 7/78 (8%)
 Frame = -1

Query: 316 PPRSNYSFAGAPFP-------PRAKLATPPVIGSERLRLQVPGWRPGEQARRLEGDSAVS 158
           PP SNY+ A  P+        P++  A PP   S R R+  P + PG    +        
Sbjct: 98  PPSSNYNTAKPPYQTSQFYARPQSSYAPPP---SGRPRISYP-YPPGYMCYKCHNTGYKD 153

Query: 157 SDRPDRDRALRTSQRRDV 104
           S RP    A R  +  DV
Sbjct: 154 SGRPCGRCARRFGRSYDV 171


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,082,204
Number of Sequences: 5004
Number of extensions: 36520
Number of successful extensions: 177
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)