Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP05_FL5_F08
(865 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF000263-12|AAO21392.1| 838|Caenorhabditis elegans Hypothetical... 32 0.61
AF000263-11|AAL77184.1| 866|Caenorhabditis elegans Hypothetical... 32 0.61
AF000263-10|AAM22070.1| 163|Caenorhabditis elegans Hypothetical... 32 0.61
AF000263-9|AAO21391.2| 184|Caenorhabditis elegans Hypothetical ... 32 0.61
AF000263-8|AAK21461.1| 924|Caenorhabditis elegans Hypothetical ... 32 0.61
AF000263-7|AAK21463.1| 925|Caenorhabditis elegans Hypothetical ... 32 0.61
Z83220-4|CAC42264.1| 617|Caenorhabditis elegans Hypothetical pr... 30 2.4
Z81518-1|CAB04214.3| 601|Caenorhabditis elegans Hypothetical pr... 30 2.4
Z82269-3|CAB05207.2| 1319|Caenorhabditis elegans Hypothetical pr... 29 3.2
Z82269-2|CAJ76945.1| 1129|Caenorhabditis elegans Hypothetical pr... 29 3.2
AF106589-3|AAT81179.1| 511|Caenorhabditis elegans Hypothetical ... 29 4.3
AF100669-1|AAK39265.1| 931|Caenorhabditis elegans Hypothetical ... 29 4.3
Z99281-19|CAD56260.1| 317|Caenorhabditis elegans Hypothetical p... 28 9.9
Z92773-4|CAB07130.2| 584|Caenorhabditis elegans Hypothetical pr... 28 9.9
Z81114-8|CAB97236.1| 584|Caenorhabditis elegans Hypothetical pr... 28 9.9
Z50797-1|CAA90671.1| 206|Caenorhabditis elegans Hypothetical pr... 28 9.9
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 28 9.9
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 28 9.9
U28738-10|AAK72066.3| 208|Caenorhabditis elegans Sr protein (sp... 28 9.9
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 28 9.9
AC006833-8|AAF60944.1| 360|Caenorhabditis elegans Hypothetical ... 28 9.9
>AF000263-12|AAO21392.1| 838|Caenorhabditis elegans Hypothetical
protein T08B2.5f protein.
Length = 838
Score = 31.9 bits (69), Expect = 0.61
Identities = 21/45 (46%), Positives = 23/45 (51%)
Frame = +3
Query: 99 ARTSRRCDVRSARSRSGRSEDTALSPSRRRACSPGRHPGTWRRRR 233
AR +RR RS R GRS SPSRRR R + RRRR
Sbjct: 27 AREARRSRSRSRDRRGGRSRSR--SPSRRRTSRDRRDDRSSRRRR 69
>AF000263-11|AAL77184.1| 866|Caenorhabditis elegans Hypothetical
protein T08B2.5c protein.
Length = 866
Score = 31.9 bits (69), Expect = 0.61
Identities = 21/45 (46%), Positives = 23/45 (51%)
Frame = +3
Query: 99 ARTSRRCDVRSARSRSGRSEDTALSPSRRRACSPGRHPGTWRRRR 233
AR +RR RS R GRS SPSRRR R + RRRR
Sbjct: 55 AREARRSRSRSRDRRGGRSRSR--SPSRRRTSRDRRDDRSSRRRR 97
>AF000263-10|AAM22070.1| 163|Caenorhabditis elegans Hypothetical
protein T08B2.5d protein.
Length = 163
Score = 31.9 bits (69), Expect = 0.61
Identities = 21/45 (46%), Positives = 23/45 (51%)
Frame = +3
Query: 99 ARTSRRCDVRSARSRSGRSEDTALSPSRRRACSPGRHPGTWRRRR 233
AR +RR RS R GRS SPSRRR R + RRRR
Sbjct: 113 AREARRSRSRSRDRRGGRSRSR--SPSRRRTSRDRRDDRSSRRRR 155
>AF000263-9|AAO21391.2| 184|Caenorhabditis elegans Hypothetical
protein T08B2.5e protein.
Length = 184
Score = 31.9 bits (69), Expect = 0.61
Identities = 21/45 (46%), Positives = 23/45 (51%)
Frame = +3
Query: 99 ARTSRRCDVRSARSRSGRSEDTALSPSRRRACSPGRHPGTWRRRR 233
AR +RR RS R GRS SPSRRR R + RRRR
Sbjct: 134 AREARRSRSRSRDRRGGRSRSR--SPSRRRTSRDRRDDRSSRRRR 176
>AF000263-8|AAK21461.1| 924|Caenorhabditis elegans Hypothetical
protein T08B2.5a protein.
Length = 924
Score = 31.9 bits (69), Expect = 0.61
Identities = 21/45 (46%), Positives = 23/45 (51%)
Frame = +3
Query: 99 ARTSRRCDVRSARSRSGRSEDTALSPSRRRACSPGRHPGTWRRRR 233
AR +RR RS R GRS SPSRRR R + RRRR
Sbjct: 113 AREARRSRSRSRDRRGGRSRSR--SPSRRRTSRDRRDDRSSRRRR 155
>AF000263-7|AAK21463.1| 925|Caenorhabditis elegans Hypothetical
protein T08B2.5b protein.
Length = 925
Score = 31.9 bits (69), Expect = 0.61
Identities = 21/45 (46%), Positives = 23/45 (51%)
Frame = +3
Query: 99 ARTSRRCDVRSARSRSGRSEDTALSPSRRRACSPGRHPGTWRRRR 233
AR +RR RS R GRS SPSRRR R + RRRR
Sbjct: 114 AREARRSRSRSRDRRGGRSRSR--SPSRRRTSRDRRDDRSSRRRR 156
>Z83220-4|CAC42264.1| 617|Caenorhabditis elegans Hypothetical
protein C34B7.4 protein.
Length = 617
Score = 29.9 bits (64), Expect = 2.4
Identities = 14/57 (24%), Positives = 31/57 (54%)
Frame = -1
Query: 502 EKVPAKTTMAGQHLRQPEGEASAVAAHPVRENRADRLDGTEAGRRVRQAARPRLQHG 332
++ P+ ++ ++LR+P + + ++ P+ ++ +RLD TE R L+HG
Sbjct: 32 QQTPSSSSSKRKNLRKPSTDDTPSSSEPL--SKKNRLDSTETAEEDNTRRRRTLKHG 86
>Z81518-1|CAB04214.3| 601|Caenorhabditis elegans Hypothetical
protein F28D9.1 protein.
Length = 601
Score = 29.9 bits (64), Expect = 2.4
Identities = 20/49 (40%), Positives = 23/49 (46%)
Frame = +3
Query: 90 P*PARTSRRCDVRSARSRSGRSEDTALSPSRRRACSPGRHPGTWRRRRS 236
P P R R A R RS + SP+ RR SP + P RRRRS
Sbjct: 422 PAPKRAKSRSKSPPAPRRR-RSPSQSKSPAPRRRRSPSKSPQAPRRRRS 469
>Z82269-3|CAB05207.2| 1319|Caenorhabditis elegans Hypothetical protein
F52G2.2a protein.
Length = 1319
Score = 29.5 bits (63), Expect = 3.2
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = -1
Query: 364 RQAARPRLQHGPPR-LEPPRSNYSFAGAPFPP 272
+Q+ +PR P L PP S SF GAP PP
Sbjct: 1221 QQSYQPRYNGAPSGPLPPPSSQSSFNGAPAPP 1252
>Z82269-2|CAJ76945.1| 1129|Caenorhabditis elegans Hypothetical protein
F52G2.2b protein.
Length = 1129
Score = 29.5 bits (63), Expect = 3.2
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = -1
Query: 364 RQAARPRLQHGPPR-LEPPRSNYSFAGAPFPP 272
+Q+ +PR P L PP S SF GAP PP
Sbjct: 1031 QQSYQPRYNGAPSGPLPPPSSQSSFNGAPAPP 1062
>AF106589-3|AAT81179.1| 511|Caenorhabditis elegans Hypothetical
protein Y44E3A.4 protein.
Length = 511
Score = 29.1 bits (62), Expect = 4.3
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
Frame = -1
Query: 388 GTEAGRR----VRQAARPRLQHGPPRLEPPRSNYSFAGAPFPPRAKLATPP 248
GTE+G R RQA + H PP + PP+ A P P + +A PP
Sbjct: 255 GTESGARHGSISRQATLTFVSHKPPPVNPPQP----AVPPKPAKISVADPP 301
>AF100669-1|AAK39265.1| 931|Caenorhabditis elegans Hypothetical
protein R11E3.3 protein.
Length = 931
Score = 29.1 bits (62), Expect = 4.3
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = +2
Query: 38 KGVVRSMALYGAPVWCHALTRKNVAALRRPQRAIAVRAIRG 160
+ +++ ALYGAP W L+ N+ L R+ A+RA G
Sbjct: 687 QALIKPTALYGAPAWTSLLSDTNLEKLEIAYRS-ALRACVG 726
>Z99281-19|CAD56260.1| 317|Caenorhabditis elegans Hypothetical
protein Y57G11C.38 protein.
Length = 317
Score = 27.9 bits (59), Expect = 9.9
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = +2
Query: 476 HGCFGRYLFKIAGREPTAQCHHCADRDXG 562
H C G Y + G+ P + C DRD G
Sbjct: 156 HTCQGNYCVSVRGQTPYSYCGGVWDRDTG 184
>Z92773-4|CAB07130.2| 584|Caenorhabditis elegans Hypothetical
protein W08E3.2 protein.
Length = 584
Score = 27.9 bits (59), Expect = 9.9
Identities = 14/46 (30%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Frame = -2
Query: 450 KVRHPRSRPTQSARTGRTASTVRRPADGSAK-RRDHASSTDRRDWS 316
++ HP P +S+ ++++ RRP + S++ SS+ RRD+S
Sbjct: 304 RMSHPMGPPRRSSGAPPSSASNRRPVESSSRGPPPPPSSSSRRDYS 349
>Z81114-8|CAB97236.1| 584|Caenorhabditis elegans Hypothetical
protein W08E3.2 protein.
Length = 584
Score = 27.9 bits (59), Expect = 9.9
Identities = 14/46 (30%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Frame = -2
Query: 450 KVRHPRSRPTQSARTGRTASTVRRPADGSAK-RRDHASSTDRRDWS 316
++ HP P +S+ ++++ RRP + S++ SS+ RRD+S
Sbjct: 304 RMSHPMGPPRRSSGAPPSSASNRRPVESSSRGPPPPPSSSSRRDYS 349
>Z50797-1|CAA90671.1| 206|Caenorhabditis elegans Hypothetical
protein T22H6.1 protein.
Length = 206
Score = 27.9 bits (59), Expect = 9.9
Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 6/40 (15%)
Frame = -1
Query: 229 LRLQVPGWRPGEQARRLEGD------SAVSSDRPDRDRAL 128
LRLQV G + GEQ + G +S++ P RDRAL
Sbjct: 77 LRLQVKGLKHGEQITKSSGKCNSKKLDTISAETPLRDRAL 116
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 27.9 bits (59), Expect = 9.9
Identities = 16/50 (32%), Positives = 18/50 (36%)
Frame = -1
Query: 349 PRLQHGPPRLEPPRSNYSFAGAPFPPRAKLATPPVIGSERLRLQVPGWRP 200
P + GPP PP G P PP PP+ G PG P
Sbjct: 720 PPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCP 769
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 27.9 bits (59), Expect = 9.9
Identities = 16/50 (32%), Positives = 18/50 (36%)
Frame = -1
Query: 349 PRLQHGPPRLEPPRSNYSFAGAPFPPRAKLATPPVIGSERLRLQVPGWRP 200
P + GPP PP G P PP PP+ G PG P
Sbjct: 720 PPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCP 769
>U28738-10|AAK72066.3| 208|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform d protein.
Length = 208
Score = 27.9 bits (59), Expect = 9.9
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = -2
Query: 444 RHPRSRPTQSARTGRTASTVRR--PADGSAKRRDHASSTDRRDWSLRA 307
R RSR + +R R+ S+ R P S +R + S + +RD LRA
Sbjct: 104 RRSRSRDRKRSRRSRSRSSSRSRSPVRESRRRSESRSPSPKRDLQLRA 151
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 27.9 bits (59), Expect = 9.9
Identities = 16/50 (32%), Positives = 18/50 (36%)
Frame = -1
Query: 349 PRLQHGPPRLEPPRSNYSFAGAPFPPRAKLATPPVIGSERLRLQVPGWRP 200
P + GPP PP G P PP PP+ G PG P
Sbjct: 303 PPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCP 352
>AC006833-8|AAF60944.1| 360|Caenorhabditis elegans Hypothetical
protein ZK616.8 protein.
Length = 360
Score = 27.9 bits (59), Expect = 9.9
Identities = 21/72 (29%), Positives = 28/72 (38%), Gaps = 1/72 (1%)
Frame = -1
Query: 283 PFPP-RAKLATPPVIGSERLRLQVPGWRPGEQARRLEGDSAVSSDRPDRDRALRTSQRRD 107
PF P + +TPPV R RLQ Q E DS V P+ RA + +
Sbjct: 227 PFSPSKQPTSTPPVSEGNRKRLQTKVVERSNQIES-EMDSFVKKIEPNERRATQYNHSNS 285
Query: 106 VLAGQGVAPYGS 71
+ P G+
Sbjct: 286 LSGSNEAVPPGN 297
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,211,865
Number of Sequences: 27780
Number of extensions: 251130
Number of successful extensions: 1198
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1050
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1194
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2160943708
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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