Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP05_FL5_F08
         (865 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          22   6.3  
AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    22   8.4  
AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    22   8.4  
AY569716-1|AAS86669.1|  406|Apis mellifera complementary sex det...    22   8.4  
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    22   8.4  
AY569710-1|AAS86663.1|  408|Apis mellifera complementary sex det...    22   8.4  
AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex det...    22   8.4  
AY569708-1|AAS86661.1|  408|Apis mellifera complementary sex det...    22   8.4  
AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex det...    22   8.4  
AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex det...    22   8.4  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    22   8.4  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    22   8.4  
AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    22   8.4  
AY569696-1|AAS86649.1|  414|Apis mellifera complementary sex det...    22   8.4  
AY569695-1|AAS86648.1|  414|Apis mellifera complementary sex det...    22   8.4  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    22   8.4  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    22   8.4  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   8.4  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   8.4  

>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = -3

Query: 92  GRGTIREPRIVPS 54
           GRG  RE RI+PS
Sbjct: 320 GRGRSREHRIIPS 332


>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 129 SARSRSGRSEDTALSPSRRRACSPGRH 209
           S RSR+   + T+   SR R+CS  R+
Sbjct: 205 SLRSRTHGFQHTSSRYSRERSCSRDRN 231


>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 129 SARSRSGRSEDTALSPSRRRACSPGRH 209
           S RSR+   + T+   SR R+CS  R+
Sbjct: 205 SLRSRTHGFQHTSSRYSRERSCSRDRN 231


>AY569716-1|AAS86669.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 129 SARSRSGRSEDTALSPSRRRACSPGRH 209
           S RSR+   + T+   SR R+CS  R+
Sbjct: 216 SLRSRTHGFQHTSSRYSRERSCSRDRN 242


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 129 SARSRSGRSEDTALSPSRRRACSPGRH 209
           S RSR+   + T+   SR R+CS  R+
Sbjct: 216 SLRSRTHGFQHTSSRYSRERSCSRDRN 242


>AY569710-1|AAS86663.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 129 SARSRSGRSEDTALSPSRRRACSPGRH 209
           S RSR+   + T+   SR R+CS  R+
Sbjct: 216 SLRSRTHGFQHTSSHYSRERSCSRDRN 242


>AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 129 SARSRSGRSEDTALSPSRRRACSPGRH 209
           S RSR+   + T+   SR R+CS  R+
Sbjct: 216 SLRSRTHGFQHTSSHYSRERSCSRDRN 242


>AY569708-1|AAS86661.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 129 SARSRSGRSEDTALSPSRRRACSPGRH 209
           S RSR+   + T+   SR R+CS  R+
Sbjct: 216 SLRSRTHGFQHTSSHYSRERSCSRDRN 242


>AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 129 SARSRSGRSEDTALSPSRRRACSPGRH 209
           S RSR+   + T+   SR R+CS  R+
Sbjct: 216 SLRSRTHGFQHTSSHYSRERSCSRDRN 242


>AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 129 SARSRSGRSEDTALSPSRRRACSPGRH 209
           S RSR+   + T+   SR R+CS  R+
Sbjct: 205 SLRSRTHGFQHTSSHYSRERSCSRDRN 231


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 129 SARSRSGRSEDTALSPSRRRACSPGRH 209
           S RSR+   + T+   SR R+CS  R+
Sbjct: 216 SLRSRTHGFQHTSSHYSRERSCSRDRN 242


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 129 SARSRSGRSEDTALSPSRRRACSPGRH 209
           S RSR+   + T+   SR R+CS  R+
Sbjct: 216 SLRSRTHGFQHTSSRYSRERSCSRDRN 242


>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 129 SARSRSGRSEDTALSPSRRRACSPGRH 209
           S RSR+   + T+   SR R+CS  R+
Sbjct: 216 SLRSRTHGFQHTSSRYSRERSCSRDRN 242


>AY569696-1|AAS86649.1|  414|Apis mellifera complementary sex
           determiner protein.
          Length = 414

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 129 SARSRSGRSEDTALSPSRRRACSPGRH 209
           S RSR+   + T+   SR R+CS  R+
Sbjct: 216 SLRSRTHGFQHTSSRYSRERSCSRDRN 242


>AY569695-1|AAS86648.1|  414|Apis mellifera complementary sex
           determiner protein.
          Length = 414

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 129 SARSRSGRSEDTALSPSRRRACSPGRH 209
           S RSR+   + T+   SR R+CS  R+
Sbjct: 216 SLRSRTHGFQHTSSRYSRERSCSRDRN 242


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 129 SARSRSGRSEDTALSPSRRRACSPGRH 209
           S RSR+   + T+   SR R+CS  R+
Sbjct: 216 SLRSRTHGFQHTSSRYSRERSCSRDRN 242


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 129 SARSRSGRSEDTALSPSRRRACSPGRH 209
           S RSR+   + T+   SR R+CS  R+
Sbjct: 216 SLRSRTHDFQHTSSRYSRERSCSRDRN 242


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 13/54 (24%), Positives = 27/54 (50%)
 Frame = -1

Query: 499  KVPAKTTMAGQHLRQPEGEASAVAAHPVRENRADRLDGTEAGRRVRQAARPRLQ 338
            +VPA+ T  G H+ +P   ++ +A + V +   +   G   G ++R  +   +Q
Sbjct: 1311 RVPARITSFGGHVVRPWRGSATLACNAVGDPTREWYKG--QGEQIRTDSTRNIQ 1362


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 13/54 (24%), Positives = 27/54 (50%)
 Frame = -1

Query: 499  KVPAKTTMAGQHLRQPEGEASAVAAHPVRENRADRLDGTEAGRRVRQAARPRLQ 338
            +VPA+ T  G H+ +P   ++ +A + V +   +   G   G ++R  +   +Q
Sbjct: 1307 RVPARITSFGGHVVRPWRGSATLACNAVGDPTREWYKG--QGEQIRTDSTRNIQ 1358


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,188
Number of Sequences: 438
Number of extensions: 3266
Number of successful extensions: 25
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27916710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)