Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP05_FL5_E19
         (865 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...   239   2e-65
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...   239   2e-65

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  239 bits (586), Expect = 2e-65
 Identities = 112/141 (79%), Positives = 121/141 (85%)
 Frame = +1

Query: 244 MSNLADPVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAF 423
           MS LADPVAFAKDFLAGG++AA+SKT VAPIERVKLLLQVQH+SKQI+ +QRYKG++D F
Sbjct: 1   MSGLADPVAFAKDFLAGGVAAAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCF 60

Query: 424 VRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLGGVDKKTQFWRYFXXXXX 603
           VRIPKEQG LS+WRGN ANVIRYFPTQALNFAFKDKYKQVFLGGVDK TQF RYF     
Sbjct: 61  VRIPKEQGFLSYWRGNLANVIRYFPTQALNFAFKDKYKQVFLGGVDKNTQFLRYFVGNLA 120

Query: 604 XXXXXXXTSLCFVYPLDFART 666
                  TSLCFVYPLDFART
Sbjct: 121 SGGAAGATSLCFVYPLDFART 141



 Score = 92.7 bits (220), Expect = 4e-21
 Identities = 43/64 (67%), Positives = 49/64 (76%)
 Frame = +3

Query: 666 RLAADVGKGXGXREFSGLGNCISXIFKSDGLIGLYXRFGVSVQGIIIYRASYFGSTKRXG 845
           RLAADVGK  G REF+GLGNC++ IFK+DG+ GLY  FGVSVQGIIIYRA+YFG      
Sbjct: 142 RLAADVGKAGGEREFTGLGNCLTKIFKADGITGLYRGFGVSVQGIIIYRAAYFGFYDTAR 201

Query: 846 GCXP 857
           G  P
Sbjct: 202 GMLP 205



 Score = 28.7 bits (61), Expect = 0.073
 Identities = 21/86 (24%), Positives = 37/86 (43%)
 Frame = +1

Query: 271 FAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGL 450
           F  +  +GG + A S   V P++  +  L    V K    ++ + G+ +   +I K  G+
Sbjct: 115 FVGNLASGGAAGATSLCFVYPLDFARTRLAAD-VGKA-GGEREFTGLGNCLTKIFKADGI 172

Query: 451 LSFWRGNFANVIRYFPTQALNFAFKD 528
              +RG   +V      +A  F F D
Sbjct: 173 TGLYRGFGVSVQGIIIYRAAYFGFYD 198



 Score = 27.5 bits (58), Expect = 0.17
 Identities = 14/53 (26%), Positives = 30/53 (56%)
 Frame = +1

Query: 331 PIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIR 489
           P + V+  + +Q  S +  ++  YK  +  +  I K +G  +F++G F+N++R
Sbjct: 232 PFDTVRRRMMMQ--SGRAKSEILYKSTLHCWATIYKTEGGNAFFKGAFSNILR 282



 Score = 22.6 bits (46), Expect = 4.8
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = +2

Query: 827 FYXTXRGMLXXPK 865
           FY T RGML  PK
Sbjct: 196 FYDTARGMLPDPK 208


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  239 bits (586), Expect = 2e-65
 Identities = 112/141 (79%), Positives = 121/141 (85%)
 Frame = +1

Query: 244 MSNLADPVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAF 423
           MS LADPVAFAKDFLAGG++AA+SKT VAPIERVKLLLQVQH+SKQI+ +QRYKG++D F
Sbjct: 1   MSGLADPVAFAKDFLAGGVAAAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCF 60

Query: 424 VRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLGGVDKKTQFWRYFXXXXX 603
           VRIPKEQG LS+WRGN ANVIRYFPTQALNFAFKDKYKQVFLGGVDK TQF RYF     
Sbjct: 61  VRIPKEQGFLSYWRGNLANVIRYFPTQALNFAFKDKYKQVFLGGVDKNTQFLRYFVGNLA 120

Query: 604 XXXXXXXTSLCFVYPLDFART 666
                  TSLCFVYPLDFART
Sbjct: 121 SGGAAGATSLCFVYPLDFART 141



 Score = 92.7 bits (220), Expect = 4e-21
 Identities = 43/64 (67%), Positives = 49/64 (76%)
 Frame = +3

Query: 666 RLAADVGKGXGXREFSGLGNCISXIFKSDGLIGLYXRFGVSVQGIIIYRASYFGSTKRXG 845
           RLAADVGK  G REF+GLGNC++ IFK+DG+ GLY  FGVSVQGIIIYRA+YFG      
Sbjct: 142 RLAADVGKAGGEREFTGLGNCLTKIFKADGITGLYRGFGVSVQGIIIYRAAYFGFYDTAR 201

Query: 846 GCXP 857
           G  P
Sbjct: 202 GMLP 205



 Score = 28.7 bits (61), Expect = 0.073
 Identities = 21/86 (24%), Positives = 37/86 (43%)
 Frame = +1

Query: 271 FAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGL 450
           F  +  +GG + A S   V P++  +  L    V K    ++ + G+ +   +I K  G+
Sbjct: 115 FVGNLASGGAAGATSLCFVYPLDFARTRLAAD-VGKA-GGEREFTGLGNCLTKIFKADGI 172

Query: 451 LSFWRGNFANVIRYFPTQALNFAFKD 528
              +RG   +V      +A  F F D
Sbjct: 173 TGLYRGFGVSVQGIIIYRAAYFGFYD 198



 Score = 27.5 bits (58), Expect = 0.17
 Identities = 14/53 (26%), Positives = 30/53 (56%)
 Frame = +1

Query: 331 PIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIR 489
           P + V+  + +Q  S +  ++  YK  +  +  I K +G  +F++G F+N++R
Sbjct: 232 PFDTVRRRMMMQ--SGRAKSEILYKSTLHCWATIYKTEGGNAFFKGAFSNILR 282



 Score = 22.6 bits (46), Expect = 4.8
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = +2

Query: 827 FYXTXRGMLXXPK 865
           FY T RGML  PK
Sbjct: 196 FYDTARGMLPDPK 208


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 222,583
Number of Sequences: 438
Number of extensions: 5044
Number of successful extensions: 12
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27916710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)