Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP05_FL5_D04
         (841 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    80   2e-17
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    25   0.87 
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    24   1.5  
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    23   2.7  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    23   3.5  

>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 80.2 bits (189), Expect = 2e-17
 Identities = 53/219 (24%), Positives = 93/219 (42%), Gaps = 2/219 (0%)
 Frame = +2

Query: 113 MGCGTSFVKYXXXXXXXXXXXXXXXXXGIGVAFLMNWTMVKDLLKTHLAVGPWIFIVVGA 292
           M CG   +KY                  +GV   +    V   ++T LA      IV+G+
Sbjct: 1   MSCGMGMIKYLLFIFNFVFAVCGLGILTLGVLIHLQILGVSKQIETGLAFPSITLIVLGS 60

Query: 293 VMFVIAFLGCCGAIRESHCMVVTYAXXXXXXXXXXXXXXXXXFTYGESIKESIMDGVGVL 472
           ++FVI+F GCCGAIRESHCM +T+A                 F   ++  +     +   
Sbjct: 61  IIFVISFFGCCGAIRESHCMTITFASFLLFILLVQIAVAVYAFIVVKN--DDNFRNISEK 118

Query: 473 FKKRSDANADETAEAVFSE-LQRQFECCGNTGAINYGQFTLPESCCVKKSILSTFAGNNC 649
           +++  +     +    F + +Q+  +CCG     +Y    +P SCC      ++   N C
Sbjct: 119 YQEIFNGYFLNSESKDFIDFIQKNLQCCGVHSLSDYNDKPIPASCC------NSPENNTC 172

Query: 650 TV-DAANPGCGPKIGELYQKWNKPIAGVALGVACVEVVG 763
           ++ ++   GC   + +  +        VA+ +A VE++G
Sbjct: 173 SISNSYTNGCVEALKDTVKLAGTVFGSVAIAIAIVELIG 211



 Score = 23.8 bits (49), Expect = 2.0
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = +3

Query: 774 ALCLANSIXNMDXR 815
           ALCLANSI N + R
Sbjct: 215 ALCLANSIKNAERR 228


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 25.0 bits (52), Expect = 0.87
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +2

Query: 440 KESIMDGVGVLFKKRSDANADETAEAVFSELQR 538
           K S+M   G+  +     + DET   VFS LQR
Sbjct: 96  KRSLMGAQGLSIRGLQINHEDETIRPVFSTLQR 128


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +2

Query: 476 KKRSDANADETAEAVFSELQRQ 541
           +KR DA  DE+ EA+F  + RQ
Sbjct: 292 EKRDDAK-DESVEAIFQSILRQ 312


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = +2

Query: 587 TLPESCCVKKSILSTFAGNNCTVDAANPGCGPKIGEL 697
           T  ESC V   I + + G N  +  A    G KI EL
Sbjct: 252 TFFESCGVADLIATCYGGRNRKICEAFVKTGKKISEL 288


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = -2

Query: 711 FHFW*SSPILGPQP-GFAASTVQLLPAK 631
           F FW S  ++GP+P  F  +T  L+  K
Sbjct: 26  FDFWKSRGVVGPKPVPFFGTTKDLILVK 53


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,747
Number of Sequences: 438
Number of extensions: 3844
Number of successful extensions: 17
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26945694
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)