Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP05_FL5_D02
         (866 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    29   0.86 
SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger protein|Schiz...    29   1.1  
SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity prote...    28   1.5  
SPAC6G9.11 |syb1||synaptobrevin |Schizosaccharomyces pombe|chr 1...    27   2.6  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    27   3.5  
SPAC10F6.16 |mug134||endosulphine family protein|Schizosaccharom...    27   3.5  
SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|...    27   4.6  
SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces pom...    26   8.0  
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p...    26   8.0  

>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 29.1 bits (62), Expect = 0.86
 Identities = 25/111 (22%), Positives = 41/111 (36%)
 Frame = +2

Query: 278 TGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKIPVTVDLCWTTADVT 457
           T T   S  +T  +    +S+   Y    + +    +  S P    PVT   C T+  V 
Sbjct: 482 TSTPVTSTPLTTTNCTTSTSV--PYTSTPVTSSNYTISSSTPVTSTPVTTTNCTTSTSVL 539

Query: 458 VEGVNVLATPSSSRITIGGLALMHQATLPCDLGYINPIIKSPIPYTNHPXT 610
                V +TP ++       ++ + +T      Y    I S  P T+ P T
Sbjct: 540 YTSTPVTSTPLATTNCTTSTSVPYTSTPVTSSNY---TISSSTPVTSTPVT 587



 Score = 28.3 bits (60), Expect = 1.5
 Identities = 24/109 (22%), Positives = 41/109 (37%), Gaps = 2/109 (1%)
 Frame = +2

Query: 290 TKSNSVTVQSLPNVSSIIKG--YRDAYLVNLEAVVFPSAPSLKIPVTVDLCWTTADVTVE 463
           T +N  T  S+P  S+ +              +V + S P    P+T   C T+  +   
Sbjct: 423 TTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTSVPYTSTPVTSTPLTTTNCTTSTSIPYT 482

Query: 464 GVNVLATPSSSRITIGGLALMHQATLPCDLGYINPIIKSPIPYTNHPXT 610
              V +TP ++       ++ + +T      Y    I S  P T+ P T
Sbjct: 483 STPVTSTPLTTTNCTTSTSVPYTSTPVTSSNY---TISSSTPVTSTPVT 528


>SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 547

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 28/76 (36%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
 Frame = +2

Query: 278 TGTETKSNSVTV-QSLPNVS--SIIKGYRDAYLVNLEAVVFPSAPSLKIPVTVDLCWTTA 448
           TG       +T+ QSL N+S  S I   R     N  A  FPS  S  +P  VDL     
Sbjct: 308 TGVSLSRPRLTLDQSLGNLSLGSGINQRRQVPRSNSYAGAFPSVVSASLPTKVDLN-HQM 366

Query: 449 DVTVEGVNVLATPSSS 496
           DV+ E    L+TP  S
Sbjct: 367 DVSDEEQRFLSTPLGS 382


>SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity protein
           kinase Mph1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 678

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +2

Query: 497 RITIGGLALMHQATLPCDLGYINPIIKSPIPYTNHPXT*HP 619
           R+TI  L L+H    P    Y+ P+ K P+P + H    HP
Sbjct: 591 RLTIPEL-LVHPFLNPLP-SYLTPLAKKPLPVSGHTNNAHP 629


>SPAC6G9.11 |syb1||synaptobrevin |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 121

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = -3

Query: 525 IRARPPIVMREDEGVASTLTPSTVTSAVVQQRSTVTGILR 406
           I A P   +R     AS+ TP+  T+A+ QQ     GI+R
Sbjct: 9   IPAEPSAAVRSGNAAASS-TPNMKTAAIQQQIDDTVGIMR 47


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +2

Query: 260  RLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRD-AYLVN 373
            R+Y  L  T   ++S    + PN S + +GY + A+L+N
Sbjct: 2840 RVYLPLVPTIQANSSADSSNPPNTSFLFRGYHETAWLIN 2878


>SPAC10F6.16 |mug134||endosulphine family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 139

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = -2

Query: 622 KWMLSXGVVGVWNRGFDDRVDVAEIAGE 539
           KWMLS  ++ + +   + +VDVA+++ E
Sbjct: 6   KWMLSTTIIAMSSSNSEQKVDVAKLSPE 33


>SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1036

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 16/30 (53%), Positives = 21/30 (70%)
 Frame = +2

Query: 341 IKGYRDAYLVNLEAVVFPSAPSLKIPVTVD 430
           +K  RD YL NLEA  FPS+  +KI +T+D
Sbjct: 378 LKTRRDQYLTNLEA--FPSSLFMKI-LTLD 404


>SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 566

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = -3

Query: 510 PIVMREDEGVASTLTPSTVTSAVVQQRSTVTGILRLGAEGKTTAS 376
           P  ++E   +  TL  +T+T   V   + +  +L++ AEGK TAS
Sbjct: 507 PEEIKERIAIPKTLI-ATITLPDVSPNAKIELVLQIDAEGKLTAS 550


>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
           protein 1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 567

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 18/77 (23%), Positives = 34/77 (44%), Gaps = 2/77 (2%)
 Frame = +1

Query: 481 HPFILSHYYWRSRPYASSHPPLRSRLHQPD-HQIPDSIHQPPXNLTSIXINPLTPY*KEF 657
           HP+ +++ +   +PY  +  P    L+QP  H +    +  P    ++  N ++     F
Sbjct: 174 HPYHVNNTHQYLKPYVQNVYPQMPSLNQPGLHIVNQPTYLAPVPSATVPTNSVSLSMPSF 233

Query: 658 APGLKP-PXVIRXSISV 705
           + G K  P  I   +SV
Sbjct: 234 SQGQKNIPAAINQEMSV 250


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,116,276
Number of Sequences: 5004
Number of extensions: 58635
Number of successful extensions: 203
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 432473040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)